Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WIR04_RS00565 Genome accession   NZ_CP149130
Coordinates   120862..122379 (-) Length   505 a.a.
NCBI ID   WP_338889698.1    Uniprot ID   -
Organism   Aeromonas rivipollensis strain BE1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 115862..127379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIR04_RS00540 - 117099..117734 (-) 636 WP_338889690.1 nicotinamidase -
  WIR04_RS00545 - 117809..118459 (+) 651 WP_111910828.1 NUDIX hydrolase -
  WIR04_RS00550 - 118456..118941 (+) 486 WP_338889692.1 DUF523 domain-containing protein -
  WIR04_RS00555 - 118884..119831 (-) 948 WP_338889695.1 acyltransferase -
  WIR04_RS00560 - 119841..120740 (-) 900 WP_025328750.1 acyltransferase -
  WIR04_RS00565 comM 120862..122379 (-) 1518 WP_338889698.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WIR04_RS00570 ilvG 122763..124409 (+) 1647 WP_338889700.1 acetolactate synthase 2 catalytic subunit -
  WIR04_RS00575 ilvM 124406..124684 (+) 279 WP_307765715.1 acetolactate synthase 2 small subunit -
  WIR04_RS00580 - 124697..125641 (+) 945 WP_338889703.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54876.75 Da        Isoelectric Point: 7.4496

>NTDB_id=956755 WIR04_RS00565 WP_338889698.1 120862..122379(-) (comM) [Aeromonas rivipollensis strain BE1]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPATYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSRQIRDRVLAARERMQNRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQRLGLSIRAWHRILRVSRTIADLAGRPAI
EKEHLIEALGYRAMDRLLSRLRSGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=956755 WIR04_RS00565 WP_338889698.1 120862..122379(-) (comM) [Aeromonas rivipollensis strain BE1]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCACCGCAAGTCACGGTGGAAGTCCATTTATCCAA
CGGGCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCCTCCAAGCACATCACAGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAACATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGACGCCGGGC
GCACCCTGCTGGTGCCGCGAGAGAACGGCCCCGAGGCCTCCCTCATCCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAGTACGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAAATCGCTGCCGCGGGTAGCCACAACCTGC
TGTTCATTGGCCCGCCCGGCACCGGTAAGAGCATGCTGGCAAGCCGCCTGCCCGGCATACTGCCGCCGCTCAGCGAGCAA
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCATCACAGGCCCTATCG
CACGCCGCACCATAGCGCCTCGGCGGTGGCCCTGGTGGGCGGTGGCAGCCACCCAAGACCGGGGGAGATCTCGCTAGCCC
ACAACGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTCGAACGCAAGGTGCTCGATTCCCTGCGTGAGCCGCTGGAAACC
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTCCCCGCCCGTTTCCAGCTGGTGGGTGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATACTGCGCTACCTCGGCAAGCTCTCGGGCC
CCTTCCTCGACAGATTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAACGGGGT
GAGTCTAGCCGGCAGATCCGCGATCGGGTGCTGGCAGCGCGGGAGCGAATGCAAAACCGCAACGGCAAGCTCAACAACCT
GCTTGATAGTCGCGAGATAGAGGATATTTGCCGATTATCACCGCAGGATGCCGAGTTTTTGGAGAATGCCATCCAGAGGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCGCGTACCATAGCGGATCTGGCGGGACGGCCCGCCATC
GAGAAGGAGCACCTGATCGAAGCGCTCGGCTACAGAGCCATGGACCGGCTGCTGTCACGGCTGCGCAGCGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.406

0.628
  comM Vibrio campbellii strain DS40M4

62.151

99.406

0.618
  comM Haemophilus influenzae Rd KW20

61.265

100

0.614
  comM Glaesserella parasuis strain SC1401

60.158

100

0.604
  comM Legionella pneumophila str. Paris

50.794

99.802

0.507
  comM Legionella pneumophila strain ERS1305867

50.794

99.802

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.465