Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WJM78_RS01605 Genome accession   NZ_CP149129
Coordinates   331242..332756 (-) Length   504 a.a.
NCBI ID   WP_339012975.1    Uniprot ID   -
Organism   Aeromonas popoffii strain BE5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 326242..337756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM78_RS01575 pncB 326274..327452 (-) 1179 WP_108537415.1 nicotinate phosphoribosyltransferase -
  WJM78_RS01580 - 327454..328089 (-) 636 WP_339012962.1 nicotinamidase -
  WJM78_RS01585 - 328165..328815 (+) 651 WP_212512842.1 DNA mismatch repair protein MutT -
  WJM78_RS01590 - 328812..329309 (+) 498 WP_339012967.1 DUF523 domain-containing protein -
  WJM78_RS01595 - 329240..330196 (-) 957 WP_339012970.1 acyltransferase -
  WJM78_RS01600 - 330206..331105 (-) 900 WP_339012972.1 acyltransferase -
  WJM78_RS01605 comM 331242..332756 (-) 1515 WP_339012975.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WJM78_RS01610 ilvG 333141..334787 (+) 1647 WP_339012978.1 acetolactate synthase 2 catalytic subunit -
  WJM78_RS01615 ilvM 334784..335074 (+) 291 WP_339012979.1 acetolactate synthase 2 small subunit -
  WJM78_RS01620 - 335087..336031 (+) 945 WP_275930875.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54577.50 Da        Isoelectric Point: 7.4492

>NTDB_id=956729 WJM78_RS01605 WP_339012975.1 331242..332756(-) (comM) [Aeromonas popoffii strain BE5]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLIGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=956729 WJM78_RS01605 WP_339012975.1 331242..332756(-) (comM) [Aeromonas popoffii strain BE5]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCACCACAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCTCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAGCACATCACCGTCAATCTGGCGCCCGCCGATCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCTATCGGCATTCTCGCCGCTTCCAAGCAAATCCCCGCAAAATACCTGCTCGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTTGGGGTGCTGCCCGCCGTGCTTGCCTGTCGCGATGCAGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCAGAGGCCTCGCTGATCCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGACAATACGAGCTGCCGCTGCCGGATCCCCAAACCACGGATGCCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCCTGCCCGGCATTCTGCCGCCACTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCGCTGGTGGGCGGCGGCAGCCACCCGCGCCCCGGCGAAATATCGCTGGCTC
ACAATGGCGTGCTGTTTCTCGACGAACTGCCCGAATTCGAGCGCAAGGTACTCGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGATTCCAGCTGATCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTCACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAAGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGCATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGCGAGATAGAGGATATTTGCCGATTATCGCCGCAAGATGCTGAGTTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGTATCCTGCGGGTGTCACGTACCATCGCCGATCTGGCAGGACAGCCCGCCATC
GGCAAGGAGCATCTGATCGAGGCGCTCGGCTACCGCGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.948

99.603

0.627
  comM Vibrio campbellii strain DS40M4

61.753

99.603

0.615
  comM Haemophilus influenzae Rd KW20

61.067

100

0.613
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462