Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WJM57_RS20995 Genome accession   NZ_CP149127
Coordinates   4506470..4507984 (+) Length   504 a.a.
NCBI ID   WP_125601920.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain BE4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4501470..4512984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM57_RS20980 - 4503198..4504139 (-) 942 WP_339022090.1 branched-chain amino acid transaminase -
  WJM57_RS20985 ilvM 4504152..4504442 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  WJM57_RS20990 ilvG 4504439..4506085 (-) 1647 WP_339022092.1 acetolactate synthase 2 catalytic subunit -
  WJM57_RS20995 comM 4506470..4507984 (+) 1515 WP_125601920.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WJM57_RS21000 - 4508121..4509020 (+) 900 WP_306642930.1 acyltransferase -
  WJM57_RS21005 - 4509164..4509661 (-) 498 WP_339022096.1 DUF523 domain-containing protein -
  WJM57_RS21010 - 4509658..4510308 (-) 651 WP_339022098.1 DNA mismatch repair protein MutT -
  WJM57_RS21015 - 4510383..4511018 (+) 636 WP_125608408.1 nicotinamidase -
  WJM57_RS21020 pncB 4511120..4512298 (+) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54665.56 Da        Isoelectric Point: 7.4493

>NTDB_id=956724 WJM57_RS20995 WP_125601920.1 4506470..4507984(+) (comM) [Aeromonas salmonicida strain BE4]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDVCRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=956724 WJM57_RS20995 WP_125601920.1 4506470..4507984(+) (comM) [Aeromonas salmonicida strain BE4]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAAGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCAGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGACCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCTCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGGCCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCCCTGGTGGGCGGTGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAACGGGGTACTCTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTACTCGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
CCTTGATAGTCGTGAAATCGAAGATGTTTGCCGATTATCACCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGACTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGATCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466