Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NFHSH190041_RS17450 Genome accession   NZ_AP026070
Coordinates   3909281..3909931 (-) Length   216 a.a.
NCBI ID   WP_261922983.1    Uniprot ID   -
Organism   Shewanella sp. NFH-SH190041     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3904281..3914931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFHSH190041_RS17430 (NFHSH190041_33210) - 3904743..3905573 (+) 831 WP_261922979.1 alpha/beta hydrolase family protein -
  NFHSH190041_RS17435 (NFHSH190041_33220) - 3905743..3906558 (-) 816 WP_261922980.1 crotonase/enoyl-CoA hydratase family protein -
  NFHSH190041_RS17440 (NFHSH190041_33230) - 3906840..3907844 (+) 1005 WP_261922981.1 response regulator -
  NFHSH190041_RS17445 (NFHSH190041_33240) - 3907864..3908832 (+) 969 WP_261922982.1 diguanylate cyclase -
  NFHSH190041_RS17450 (NFHSH190041_33250) ssb 3909281..3909931 (-) 651 WP_261922983.1 single-stranded DNA-binding protein Machinery gene
  NFHSH190041_RS17455 (NFHSH190041_33260) - 3909967..3911334 (-) 1368 WP_261922984.1 MFS transporter -
  NFHSH190041_RS17460 (NFHSH190041_33270) uvrA 3911607..3914465 (+) 2859 WP_261922985.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23938.94 Da        Isoelectric Point: 5.7611

>NTDB_id=95667 NFHSH190041_RS17450 WP_261922983.1 3909281..3909931(-) (ssb) [Shewanella sp. NFH-SH190041]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANVTVATSETWKDQQGQQQERTEWHRVVVFGKLAEIVGEYLRKGSQVYFE
GRLQTRKWKDQSGQDRYTTEIVVDQGGSMQMLGGRSQTQGGQSQGGYGQQQNQHSGNQQQQYQPAQGGYGQQQAGYAPRQ
QQQAPAQQSSGYQQQSAPAAQAPAQRPAPQPQQQQQPAQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=95667 NFHSH190041_RS17450 WP_261922983.1 3909281..3909931(-) (ssb) [Shewanella sp. NFH-SH190041]
ATGGCCAGTCGTGGTGTGAACAAAGTGATTCTGGTAGGTAATTTGGGACAGGATCCCGAGGTTCGCTATATGCCGAACGG
CAATGCTGTGGCGAACGTCACCGTGGCTACCAGTGAAACCTGGAAAGATCAGCAGGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTGGTATTTGGCAAGCTGGCTGAAATCGTCGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACTTTGAA
GGCCGCCTTCAGACCCGTAAGTGGAAAGATCAGAGCGGTCAAGACAGATACACCACTGAAATCGTGGTAGATCAGGGCGG
CAGCATGCAAATGCTGGGTGGTCGTAGCCAGACTCAGGGCGGTCAAAGCCAAGGTGGTTACGGTCAGCAACAGAACCAGC
ATAGTGGCAATCAGCAACAGCAGTATCAGCCAGCTCAAGGTGGTTATGGTCAGCAGCAGGCCGGGTATGCGCCGCGTCAG
CAGCAACAAGCACCTGCGCAGCAATCTTCTGGTTATCAGCAGCAGTCTGCACCGGCAGCGCAAGCACCAGCTCAGCGTCC
AGCGCCTCAGCCTCAGCAGCAACAACAGCCTGCACAACAAAACTATACCCCGGATTTGGACGATGGTTGGGATGACGATA
TCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.422

100

0.569
  ssb Glaesserella parasuis strain SC1401

48.357

98.611

0.477
  ssb Neisseria meningitidis MC58

45.972

97.685

0.449
  ssb Neisseria gonorrhoeae MS11

45.972

97.685

0.449

Multiple sequence alignment