Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WJL51_RS15855 Genome accession   NZ_CP149124
Coordinates   3517199..3518713 (-) Length   504 a.a.
NCBI ID   WP_339329933.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain BE2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3512199..3523713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJL51_RS15830 - 3513321..3513956 (-) 636 WP_339329930.1 nicotinamidase -
  WJL51_RS15835 - 3514032..3514682 (+) 651 WP_011707866.1 DNA mismatch repair protein MutT -
  WJL51_RS15840 - 3514783..3515268 (+) 486 WP_339329931.1 DUF523 domain-containing protein -
  WJL51_RS15845 - 3515214..3516170 (-) 957 WP_016352357.1 acyltransferase -
  WJL51_RS15850 - 3516164..3517078 (-) 915 WP_339329932.1 acyltransferase -
  WJL51_RS15855 comM 3517199..3518713 (-) 1515 WP_339329933.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WJL51_RS15860 ilvG 3519097..3520743 (+) 1647 WP_339329934.1 acetolactate synthase 2 catalytic subunit -
  WJL51_RS15865 ilvM 3520740..3520991 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  WJL51_RS15870 - 3521004..3521948 (+) 945 WP_339329935.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54682.61 Da        Isoelectric Point: 7.2522

>NTDB_id=956661 WJL51_RS15855 WP_339329933.1 3517199..3518713(-) (comM) [Aeromonas hydrophila strain BE2]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICCLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQAI
EKEHLIEALGYRAMDRLLSRLRNG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=956661 WJL51_RS15855 WP_339329933.1 3517199..3518713(-) (comM) [Aeromonas hydrophila strain BE2]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCCCCGCAAGTGACGGTGGAGGTGCACCTCTCCAA
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACTTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATCCTCGCCGCTTCCAAGCAGATACCCGCGAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCAGGGC
GTACCCTGCTGGTACCGCGAGAGAACGGTCCCGAGGCCTCGCTGATCCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCACTGCCGGATCCCCAGACCACAGAGGCCCTGCCCGATGT
ACCGGACCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGTCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGTATCTTGCCGCCGCTGAGCGAACAG
GAGGCACAGCAGACCGCCGCCATCCATTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGGCCCTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGTGGTGGCAGCCACCCAAGGCCCGGCGAAATTTCGTTGGCCC
ACAATGGGGTGCTGTTTCTGGATGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCATATCACCATCAGCCGGGCCGCCCGCCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGGCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGGGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCTGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGACGGCAGGCCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCTATGGATCGGCTGTTGTCGCGGCTGCGCAACGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

62.008

100

0.625
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.64

100

0.468