Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   LGMS210922A_RS02110 Genome accession   NZ_AP026069
Coordinates   434706..435401 (+) Length   231 a.a.
NCBI ID   WP_004259096.1    Uniprot ID   -
Organism   Lactococcus garvieae strain MS210922A     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 429706..440401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMS210922A_RS02085 (LGMS210922A_04040) - 429939..430640 (+) 702 WP_004259114.1 DeoR/GlpR family DNA-binding transcription regulator -
  LGMS210922A_RS02090 (LGMS210922A_04050) pfkB 430637..431563 (+) 927 WP_265150277.1 1-phosphofructokinase -
  LGMS210922A_RS02095 (LGMS210922A_04060) - 431578..433482 (+) 1905 WP_014024348.1 PTS fructose transporter subunit IIABC -
  LGMS210922A_RS02100 (LGMS210922A_04070) - 433594..433836 (+) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  LGMS210922A_RS02105 (LGMS210922A_04080) - 434053..434604 (+) 552 WP_265150282.1 YceD family protein -
  LGMS210922A_RS02110 (LGMS210922A_04090) covR 434706..435401 (+) 696 WP_004259096.1 response regulator transcription factor Regulator
  LGMS210922A_RS02115 (LGMS210922A_04100) covS 435490..436980 (+) 1491 WP_265150285.1 HAMP domain-containing histidine kinase Regulator
  LGMS210922A_RS02120 (LGMS210922A_04110) - 437377..438948 (+) 1572 WP_265150287.1 ABC transporter permease subunit -
  LGMS210922A_RS02125 (LGMS210922A_04120) - 438949..439686 (+) 738 WP_265150289.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26979.74 Da        Isoelectric Point: 5.4730

>NTDB_id=95627 LGMS210922A_RS02110 WP_004259096.1 434706..435401(+) (covR) [Lactococcus garvieae strain MS210922A]
MNSSKRILIIEDDKNIARFVSLELEHEGYQTAVQGNGRKGLEEAMSKDYDLILLDLMLPELDGFEVARRLRREKDTHIIM
MTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRSLFRREDHIHTIEKSDNTSFRDLVIDKTNRTVHRGKKVIDLTRR
EYDLLLTLMQNVGDVVTREYLVSEVWGYEEGTETNVVDVYIRYLRNKIDVEGRESYIQTVRGMGYVMRDRK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=95627 LGMS210922A_RS02110 WP_004259096.1 434706..435401(+) (covR) [Lactococcus garvieae strain MS210922A]
ATGAATTCATCTAAACGTATTTTGATTATCGAAGACGATAAAAACATTGCGAGATTTGTTTCACTTGAGCTTGAACACGA
AGGCTACCAAACTGCGGTTCAAGGCAATGGTCGTAAAGGTCTTGAAGAAGCAATGTCAAAAGATTATGATTTGATTTTGC
TTGACTTAATGCTCCCAGAGCTTGATGGCTTTGAGGTTGCACGACGCTTACGCCGTGAGAAAGATACACATATTATTATG
ATGACTGCACGTGATTCGACAATGGACCGTGTAGCAGGGCTTGATATTGGTGCAGATGACTATATTACAAAACCATTTGC
TATTGAAGAATTGTTAGCGCGTGTCCGCTCACTCTTCCGTCGTGAAGATCATATCCACACGATTGAAAAGTCAGACAATA
CTTCATTCCGTGATTTGGTAATTGATAAGACCAACCGTACTGTACACCGTGGAAAAAAAGTTATTGACCTTACACGTCGT
GAGTACGATTTGCTTTTGACACTGATGCAAAATGTAGGTGATGTCGTAACACGTGAATACTTGGTTTCTGAAGTATGGGG
TTACGAAGAAGGTACAGAAACAAACGTTGTGGACGTTTATATCCGTTATCTGCGTAACAAAATTGACGTGGAGGGCCGTG
AAAGCTATATCCAAACGGTTCGTGGTATGGGATATGTCATGCGTGACCGCAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

87.773

99.134

0.87
  covR Streptococcus salivarius strain HSISS4

66.81

100

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.437
  micA Streptococcus pneumoniae Cp1015

42.424

100

0.424

Multiple sequence alignment