Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WI228_RS22465 Genome accession   NZ_CP148873
Coordinates   4655215..4656735 (+) Length   506 a.a.
NCBI ID   WP_023994477.1    Uniprot ID   A0A5T9RU88
Organism   Salmonella enterica subsp. enterica serovar Infantis strain Z1322HSL0052     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4650215..4661735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WI228_RS22440 (WI228_22440) ilvE 4651772..4652701 (-) 930 WP_000208532.1 branched-chain-amino-acid transaminase -
  WI228_RS22445 (WI228_22445) ilvM 4652719..4652982 (-) 264 WP_000983260.1 acetolactate synthase 2 small subunit -
  WI228_RS22450 (WI228_22450) ilvG 4652979..4654625 (-) 1647 WP_001012555.1 acetolactate synthase 2 catalytic subunit -
  WI228_RS22455 (WI228_22455) ilvX 4654628..4654678 (-) 51 WP_192930503.1 peptide IlvX -
  WI228_RS22460 (WI228_22460) ilvL 4654765..4654863 (-) 99 WP_001311244.1 ilv operon leader peptide -
  WI228_RS22465 (WI228_22465) comM 4655215..4656735 (+) 1521 WP_023994477.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WI228_RS22470 (WI228_22470) maoP 4656760..4657098 (-) 339 WP_000840996.1 macrodomain Ori organization protein MaoP -
  WI228_RS22475 (WI228_22475) hdfR 4657205..4658053 (+) 849 WP_001541181.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55058.26 Da        Isoelectric Point: 8.4881

>NTDB_id=955902 WI228_RS22465 WP_023994477.1 4655215..4656735(+) (comM) [Salmonella enterica subsp. enterica serovar Infantis strain Z1322HSL0052]
MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTASNLEAYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL
QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNADTVQKRWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQHASKG
ENSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDTMVHLGLSIRAWQRLLKVARTIADIELADQI
SRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=955902 WI228_RS22465 WP_023994477.1 4655215..4656735(+) (comM) [Salmonella enterica subsp. enterica serovar Infantis strain Z1322HSL0052]
ATGTCACTGGCGATTGTTCATACTCGCGCCGCACTTGGCGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGTAA
TGGATTACCGGGATTAACCATGGTTGGCCTACCGGAAACCACGGTAAAAGAGGCGCGTGACCGGGTACGTAGTGCGATTA
TTAATAGCGGATATGAATTTCCGGCTAAAAAAATAACCATTAACCTTGCTCCAGCCGATCTACCGAAAGAGGGTGGAAGG
TATGACCTGCCTATTGCTGTTGCGCTTCTGGCCGCGTCTGAGCAGCTTACAGCGTCGAATCTTGAGGCATATGAGCTGGT
GGGTGAGTTAGCGCTTACAGGCGCATTACGCGGCGTTCCTGGCGCAATATCAAGTGCAACGGAAGCCATCAGGGCCGGCA
GAAATATTATCGTCGCAACAGAGAACGCGGCGGAGGTTGGGCTTATCAGCAAAGAAGGATGTTTTATCGCCGATCATCTA
CAAACCGTCTGCGCCTTTCTGGAAGGGAAACACGCCCTGGAAAGACCTTTAGCTCAGGATATGGCATCGCCTACCGCAAC
TGCCGATCTTCGCGATGTGATCGGTCAGGAGCAGGGTAAACGCGGCCTGGAGATTACAGCGGCAGGGGGACATAATCTGC
TATTGATCGGCCCGCCGGGTACGGGTAAAACCATGCTGGCCAGTCGACTGAGCGGGATTCTTCCACCATTAAGCAATGAG
GAGGCGTTGGAAAGCGCCGCGATCCTCAGTCTGGTTAATGCCGATACGGTACAAAAACGATGGCAGCAACGCCCCTTTCG
CTCACCTCATCATAGCGCCTCACTTACTGCTATGGTCGGCGGCGGCGCAATACCCGCCCCGGGAGAGATATCGCTGGCGC
ACAACGGAATTTTGTTCCTTGATGAATTGCCTGAATTTGAGCGACGCACACTGGATGCGCTACGTGAACCTATAGAATCC
GGCCAAATTCATTTATCCCGTACCAGAGCGAAAATAACGTACCCTGCCAGGTTCCAGTTAATCGCCGCAATGAATCCGAG
CCCGACCGGACATTATCAGGGAAACCATAATCGCTGCACGCCAGAACAGACACTACGTTACCTTAATAGGTTGTCAGGCC
CGTTTCTTGATCGTTTTGACCTTTCGCTTGAGATACCGCTTCCTCCGCCCGGGATTCTTAGCCAACACGCCTCAAAGGGT
GAGAACAGCGCTACGGTAAAAAAGCGGGTCATCGCCGCCCATGAACGGCAGTACCGACGCCAGAAGAAGTTAAACGCGCG
TCTGGAGGGTCGCGAAATCCAAAAATACTGTGTTTTGCATCACGATGACGCCCGCTGGCTTGAAGACACGATGGTGCATC
TTGGATTATCCATTCGCGCCTGGCAGCGTTTACTAAAAGTGGCCAGAACCATTGCCGACATAGAACTGGCTGACCAGATC
TCACGTCAGCATTTGCAGGAAGCGGTAAGCTATCGGGCGATAGACAGGTTGTTAATTCATTTGCAAAAGCTGTTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T9RU88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

57.957

100

0.583
  comM Vibrio cholerae strain A1552

58.416

99.802

0.583
  comM Vibrio campbellii strain DS40M4

57.143

99.605

0.569
  comM Legionella pneumophila str. Paris

47.887

98.221

0.47
  comM Legionella pneumophila strain ERS1305867

47.887

98.221

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.431