Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QMM33_RS10370 Genome accession   NZ_AP025940
Coordinates   2043425..2044087 (-) Length   220 a.a.
NCBI ID   WP_281737396.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700204     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2038425..2049087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM33_RS10345 (PC0204_19900) - 2038574..2038840 (-) 267 WP_001278167.1 Veg family protein -
  QMM33_RS10350 (PC0204_19910) dnaB 2038842..2040194 (-) 1353 WP_000852486.1 replicative DNA helicase -
  QMM33_RS10355 (PC0204_19920) rplI 2040238..2040690 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  QMM33_RS10360 (PC0204_19930) - 2040687..2042660 (-) 1974 WP_000715111.1 DHH family phosphoesterase -
  QMM33_RS10365 (PC0204_19940) raiA 2042797..2043345 (-) 549 WP_000599104.1 ribosome-associated translation inhibitor RaiA -
  QMM33_RS10370 (PC0204_19950) comFC/cflB 2043425..2044087 (-) 663 WP_281737396.1 ComF family protein Machinery gene
  QMM33_RS10375 (PC0204_19960) comFA/cflA 2044084..2045382 (-) 1299 WP_050207064.1 DEAD/DEAH box helicase Machinery gene
  QMM33_RS10380 (PC0204_19970) - 2045438..2046073 (+) 636 WP_000395739.1 YigZ family protein -
  QMM33_RS10385 (PC0204_19980) cysK 2046358..2047284 (+) 927 WP_000029873.1 cysteine synthase A -
  QMM33_RS10390 (PC0204_19990) tsf 2047405..2048445 (-) 1041 WP_000808063.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25291.11 Da        Isoelectric Point: 7.3688

>NTDB_id=95555 QMM33_RS10370 WP_281737396.1 2043425..2044087(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700204]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGSTINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=95555 QMM33_RS10370 WP_281737396.1 2043425..2044087(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700204]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGATCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae Rx1

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae D39

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae R6

98.636

100

0.986
  comFC/cflB Streptococcus mitis SK321

92.273

100

0.923
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914

Multiple sequence alignment