Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WHX56_RS15685 Genome accession   NZ_CP148753
Coordinates   3377909..3379438 (+) Length   509 a.a.
NCBI ID   WP_338878310.1    Uniprot ID   -
Organism   Achromobacter veterisilvae strain AB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3372909..3384438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX56_RS15655 (WHX56_15655) - 3373448..3373786 (-) 339 WP_043545226.1 P-II family nitrogen regulator -
  WHX56_RS15660 (WHX56_15660) - 3374466..3374768 (+) 303 WP_062680702.1 metalloregulator ArsR/SmtB family transcription factor -
  WHX56_RS15665 (WHX56_15665) - 3374832..3375794 (+) 963 WP_338878307.1 zinc-dependent alcohol dehydrogenase family protein -
  WHX56_RS15670 (WHX56_15670) - 3375805..3376386 (-) 582 WP_338878308.1 CGNR zinc finger domain-containing protein -
  WHX56_RS15675 (WHX56_15675) - 3376481..3377416 (+) 936 WP_338878309.1 alpha/beta hydrolase -
  WHX56_RS15680 (WHX56_15680) - 3377489..3377740 (+) 252 WP_129240479.1 accessory factor UbiK family protein -
  WHX56_RS15685 (WHX56_15685) comM 3377909..3379438 (+) 1530 WP_338878310.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WHX56_RS15690 (WHX56_15690) rpmI 3379837..3380034 (+) 198 WP_129240477.1 50S ribosomal protein L35 -
  WHX56_RS15695 (WHX56_15695) rplT 3380050..3380409 (+) 360 WP_006218741.1 50S ribosomal protein L20 -
  WHX56_RS15700 (WHX56_15700) pheS 3380487..3381509 (+) 1023 WP_129240476.1 phenylalanine--tRNA ligase subunit alpha -
  WHX56_RS15705 (WHX56_15705) pheT 3381523..3383940 (+) 2418 WP_338878311.1 phenylalanine--tRNA ligase subunit beta -
  WHX56_RS15710 (WHX56_15710) - 3383944..3384285 (+) 342 WP_338878312.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 52760.95 Da        Isoelectric Point: 8.7947

>NTDB_id=955475 WHX56_RS15685 WP_338878310.1 3377909..3379438(+) (comM) [Achromobacter veterisilvae strain AB1]
MTLAVLASRALCGLDAHAVRVEAHLGPGLPSFNVVGLPDTEVRESRERVRAAILNSGFEFPPGRITVNLSPADIPKESGR
FDLPIALGLLLASGQLAAPSDGGVAEAPAPDPTLADLVLAGELSLTGALVPVAAPLVIALSVAREAPGATLILPAGSAEQ
AAWVPGLRVLSARSLADVAAHAAGACRLPDAVPRPWPAAPPVPCLSDVRGQPGARRALEVAAAGGHSLLMIGPPGAGKSM
LAARLPGLLPPLARNEALEAAAVAALAGLSDAPMGQPPFRAPHHSASVAALVGGGSRPRPGEISLAHRGVLFLDELPEFS
RRALEALREPLEAGRVVIARALHAAQFPARFQLVAAMNPCPCGWRGHPARACACTPDQVARYAGKVSGPLLDRIDLHVAL
PPSDLDWLSGPPGEPSGPVRERALRCRQRQMARQGKPNAALAGAELDEHCRMDGEARALLSQAMRRLAGSARALHRALRV
ARTIADLDGEERLAARHVAQAVQYRRPGV

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=955475 WHX56_RS15685 WP_338878310.1 3377909..3379438(+) (comM) [Achromobacter veterisilvae strain AB1]
TTGACGCTCGCCGTTCTTGCCAGCCGGGCCCTTTGCGGCCTGGATGCCCACGCGGTGCGCGTGGAGGCGCACCTGGGCCC
CGGCCTGCCCAGCTTCAACGTGGTGGGCCTGCCGGACACCGAGGTGCGCGAAAGCCGCGAGCGCGTGCGCGCGGCCATCC
TCAATAGCGGGTTCGAGTTTCCGCCGGGCCGGATCACCGTCAATCTTTCGCCGGCCGACATCCCGAAGGAATCGGGCCGC
TTCGACCTGCCCATCGCCCTGGGCCTGCTGCTGGCTTCGGGCCAGTTGGCCGCGCCTTCCGACGGCGGCGTCGCGGAGGC
GCCGGCGCCGGATCCGACGCTGGCCGACCTGGTGCTGGCCGGCGAGCTTTCCCTGACGGGGGCGCTGGTGCCGGTCGCCG
CGCCGCTGGTCATCGCGCTGAGCGTCGCCCGCGAGGCGCCCGGCGCCACGCTCATCCTGCCCGCGGGCAGCGCCGAACAG
GCCGCCTGGGTGCCCGGCCTGCGCGTATTGTCCGCGCGCAGCCTGGCCGACGTGGCCGCGCATGCGGCCGGCGCCTGCCG
GCTGCCCGATGCCGTTCCCCGGCCCTGGCCCGCGGCCCCGCCTGTCCCGTGCCTGTCGGACGTGCGGGGGCAGCCCGGGG
CGCGGCGGGCGCTGGAGGTCGCCGCCGCGGGAGGCCACAGCCTGCTGATGATCGGCCCGCCGGGGGCGGGCAAGAGCATG
CTGGCCGCGCGCCTGCCCGGCCTGCTGCCGCCCCTGGCGCGCAACGAAGCGCTGGAGGCGGCCGCCGTGGCGGCCCTGGC
GGGCCTGTCCGACGCGCCGATGGGGCAGCCGCCGTTCCGGGCGCCGCACCATTCGGCTTCGGTGGCCGCGCTGGTGGGCG
GGGGCAGCCGGCCCCGCCCGGGCGAGATCAGCCTGGCGCATCGAGGGGTGCTGTTCCTGGACGAGCTGCCGGAATTCAGC
CGGCGCGCGCTGGAAGCCTTGCGCGAACCCCTGGAGGCGGGCAGGGTGGTCATTGCCCGGGCGCTCCACGCCGCGCAGTT
CCCCGCCCGCTTCCAACTGGTGGCGGCGATGAATCCATGTCCTTGCGGCTGGCGCGGGCATCCGGCCCGGGCCTGCGCCT
GCACGCCGGACCAGGTGGCGCGCTACGCGGGCAAGGTGTCCGGCCCCTTGCTGGACCGGATCGACCTGCACGTGGCGCTG
CCGCCGTCCGACCTCGATTGGCTGTCCGGCCCGCCGGGCGAGCCGTCGGGCCCGGTGCGCGAGCGCGCGCTGCGTTGCCG
GCAGCGCCAGATGGCCCGCCAGGGCAAGCCGAACGCCGCGCTGGCCGGCGCCGAACTGGACGAGCATTGCCGGATGGACG
GCGAGGCCCGGGCATTGCTGTCGCAGGCCATGCGCCGGCTGGCCGGCTCGGCGCGGGCCCTGCACCGGGCGCTGCGGGTG
GCCCGGACGATCGCCGATCTCGATGGCGAGGAGAGGCTGGCCGCCCGCCACGTCGCCCAGGCGGTGCAGTACCGGCGGCC
GGGAGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-505)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-402)

Subunit ChlI of Mg-chelatase (ChlI)

(21-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

47.758

100

0.481
  comM Vibrio campbellii strain DS40M4

46.967

100

0.472
  comM Haemophilus influenzae Rd KW20

46.408

100

0.47
  comM Glaesserella parasuis strain SC1401

44.874

100

0.456
  comM Legionella pneumophila str. Paris

44.531

100

0.448
  comM Legionella pneumophila strain ERS1305867

44.531

100

0.448
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.197

100

0.43