Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WHX55_RS30090 Genome accession   NZ_CP148752
Coordinates   6569053..6570546 (+) Length   497 a.a.
NCBI ID   WP_150757473.1    Uniprot ID   A0A8H2NPN4
Organism   Pseudomonas fluorescens strain AB1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6564053..6575546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS30055 (WHX55_30025) - 6564352..6565689 (-) 1338 WP_150724914.1 ammonium transporter -
  WHX55_RS30060 (WHX55_30030) glnK 6565725..6566063 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  WHX55_RS30065 (WHX55_30035) - 6566483..6566743 (+) 261 WP_150753861.1 accessory factor UbiK family protein -
  WHX55_RS30070 (WHX55_30040) - 6567148..6567672 (+) 525 WP_150757476.1 Bro-N domain-containing protein -
  WHX55_RS30075 (WHX55_30045) - 6567684..6567947 (-) 264 WP_150757475.1 HigA family addiction module antitoxin -
  WHX55_RS30080 (WHX55_30050) - 6568140..6568673 (+) 534 WP_150757474.1 N-acetyltransferase -
  WHX55_RS30085 (WHX55_30055) - 6568710..6568880 (+) 171 WP_191624900.1 hypothetical protein -
  WHX55_RS30090 (WHX55_30060) comM 6569053..6570546 (+) 1494 WP_150757473.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WHX55_RS30095 (WHX55_30065) - 6570636..6571850 (-) 1215 WP_150724910.1 aldose 1-epimerase family protein -
  WHX55_RS30100 (WHX55_30070) - 6571943..6572863 (-) 921 WP_150724909.1 LysR substrate-binding domain-containing protein -
  WHX55_RS30105 (WHX55_30075) - 6573022..6574431 (+) 1410 WP_150724908.1 NorM family multidrug efflux MATE transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53190.34 Da        Isoelectric Point: 8.0436

>NTDB_id=955463 WHX55_RS30090 WP_150757473.1 6569053..6570546(+) (comM) [Pseudomonas fluorescens strain AB1]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LQAVAHFNGHTPIEPYASNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAELVADARERQQKRQGCANAFLDLPGLRRHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQVDE
IRREHLAEALQYRPTSQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=955463 WHX55_RS30090 WP_150757473.1 6569053..6570546(+) (comM) [Pseudomonas fluorescens strain AB1]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCCGCCGTTACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCCTCGCTGACGATGGTCGGCCTGCCCGAAGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGTAGCGCGATCA
TCAATTCGGGGCTGCAATTTCCGGCGCGTCGGATCACGCTGAATCTGGCGCCAGCGGACTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCCTTGGGGATTCTCTCGGCCAGTGTGCAGGTGCCGACCCTGACACTGGATGACGTGGAGTGCCT
GGGAGAGTTGGCGCTGTCAGGTGCGGTGCGGGCGGTTCGCGGGGTGTTGCCGGCGGCGCTGGCGGCACGCAAGGCCGGGC
GTATGCTGGTAGTCCCGCGAGCGAATGCCGAGGAGGCATGCCTGGCGTCGGGGTTGAAGGTGATTGCGGTGGATCATCTG
CTTCAAGCGGTCGCGCATTTCAATGGCCACACGCCCATCGAACCCTACGCCTCCAACGGTTTGCTCTACGCCAGCAAACC
CTACCCAGACTTGAATGAAGTTCAGGGGCAACTTGCGGCCAAGCGAGCCTTGCTGATTGCGGCGGCGGGGGCTCATAACC
TGTTGTTCAGCGGGCCGCCGGGGACGGGAAAAACGTTGTTGGCGAGTCGTCTGCCGGGGCTGTTACCGCCATTGGCCGAG
AGCGAAGCGCTGGAAGTCGCAGCGATTCAATCGGTCGCCAGCTGTGTGCCACTGAGCCATTGGCCACAGCGCCCCTTCCG
ACAACCACACCATTCCGCCTCAGGACCGGCACTGGTGGGCGGTGGCTCGAAACCACAACCGGGCGAAATCACCCTCGCTC
ACCATGGCGTGCTGTTCCTCGATGAACTCCCGGAATTTGATCGCAAGGTATTGGAGGTGTTGAGAGAGCCACTGGAATCC
GGCCACATCGTGATTTCCCGTGCCAAGGACCGCGTACGCTTCCCGGCGCGCTTTCAACTGGTCGCCGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAACCGAGTGGCCGTTGTTCCTGTACGCCGGACATGGTTCAGCGCTATCGCAACAAACTGT
CGGGGCCACTGCTGGATCGTATTGATCTGCACCTGACGGTTGCTCGCGAAGCCACGGCATTGAATCCTGCGTTAAAACCC
GGCGACGACACTGCCACCGCCGCCGAGTTGGTTGCCGACGCACGAGAACGGCAACAAAAGCGCCAAGGCTGTGCCAATGC
CTTTCTCGACTTGCCGGGCCTGCGCAGACACTGCAAGTTATCCACAACAGACGAAACCTGGCTGGAGACGGCGTGTGAAC
GACTGACCTTGTCACTGCGAGCGGCCCATCGACTGCTCAAAGTAGCGCGCACTCTTGCGGACCTTGAACAAGTCGATGAG
ATCAGACGCGAGCACTTGGCCGAAGCGCTGCAATATCGGCCAACAAGCCAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.6

100

0.459