Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WD047_RS00650 Genome accession   NZ_CP148749
Coordinates   144090..145604 (-) Length   504 a.a.
NCBI ID   WP_287848697.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain AH230115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 139090..150604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WD047_RS00625 - 140216..140851 (-) 636 WP_045788782.1 nicotinamidase -
  WD047_RS00630 - 140927..141577 (+) 651 WP_011707866.1 DNA mismatch repair protein MutT -
  WD047_RS00635 - 141674..142159 (+) 486 WP_102989807.1 DUF523 domain-containing protein -
  WD047_RS00640 - 142105..143061 (-) 957 WP_016352357.1 acyltransferase -
  WD047_RS00645 - 143055..143969 (-) 915 WP_139748500.1 acyltransferase -
  WD047_RS00650 comM 144090..145604 (-) 1515 WP_287848697.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WD047_RS00655 ilvG 145988..147634 (+) 1647 WP_139748484.1 acetolactate synthase 2 catalytic subunit -
  WD047_RS00660 ilvM 147631..147882 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  WD047_RS00665 - 147895..148839 (+) 945 WP_011707859.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54722.66 Da        Isoelectric Point: 7.4494

>NTDB_id=955414 WD047_RS00650 WP_287848697.1 144090..145604(-) (comM) [Aeromonas hydrophila strain AH230115]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQVI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=955414 WD047_RS00650 WP_287848697.1 144090..145604(-) (comM) [Aeromonas hydrophila strain AH230115]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTGGGCGTCGCGGCCCCGCAAGTGACGGTGGAGGTGCACCTCTCCAA
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAATTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGAGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTGCGCACCGCCCATCAACTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAGCTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
ACCGGACCTGCAGGACGTGATCGGCCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCCTGCCCGGCATCTTGCCGCCACTCAGCGAACAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGGCCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGGGGTGGCAGTCACCCGCGACCCGGTGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTACCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGCCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTTGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTTGACCTGACGGTGGAAGTGCCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGAACGGGTGCTGGGGGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAACTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTGTCGCCGCAGGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATAGCCGATCTGGCAGGACGGCAGGTCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCCATGGACCGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466