Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP40_RS03390 Genome accession   NZ_CP148223
Coordinates   638551..638868 (+) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni strain Z1323CCJ0045     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633551..643868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP40_RS03380 (WHP40_03380) - 634233..634874 (+) 642 WP_002851542.1 HAD family hydrolase -
  WHP40_RS03385 (WHP40_03385) nifJ 634967..638527 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP40_RS03390 (WHP40_03390) ctsR 638551..638868 (+) 318 WP_002851255.1 hypothetical protein Machinery gene
  WHP40_RS03395 (WHP40_03395) ctsD 638840..640258 (+) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP40_RS03400 (WHP40_03400) ctsP 640251..640859 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP40_RS03405 (WHP40_03405) ctsX 640863..641450 (+) 588 WP_002851370.1 membrane protein Machinery gene
  WHP40_RS03410 (WHP40_03410) ctsE 641440..642999 (+) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=952985 WHP40_RS03390 WP_002851255.1 638551..638868(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0045]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=952985 WHP40_RS03390 WP_002851255.1 638551..638868(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0045]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981