Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   WHP40_RS03395 Genome accession   NZ_CP148223
Coordinates   638840..640258 (+) Length   472 a.a.
NCBI ID   WP_002851309.1    Uniprot ID   A0A1D9BM14
Organism   Campylobacter jejuni strain Z1323CCJ0045     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633840..645258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP40_RS03380 (WHP40_03380) - 634233..634874 (+) 642 WP_002851542.1 HAD family hydrolase -
  WHP40_RS03385 (WHP40_03385) nifJ 634967..638527 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP40_RS03390 (WHP40_03390) ctsR 638551..638868 (+) 318 WP_002851255.1 hypothetical protein Machinery gene
  WHP40_RS03395 (WHP40_03395) ctsD 638840..640258 (+) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP40_RS03400 (WHP40_03400) ctsP 640251..640859 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP40_RS03405 (WHP40_03405) ctsX 640863..641450 (+) 588 WP_002851370.1 membrane protein Machinery gene
  WHP40_RS03410 (WHP40_03410) ctsE 641440..642999 (+) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHP40_RS03415 (WHP40_03415) ctsF 642996..644177 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP40_RS03420 (WHP40_03420) - 644170..644934 (-) 765 WP_002851426.1 TSUP family transporter -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53281.89 Da        Isoelectric Point: 6.6184

>NTDB_id=952986 WHP40_RS03395 WP_002851309.1 638840..640258(+) (ctsD) [Campylobacter jejuni strain Z1323CCJ0045]
MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEI
FNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQN
FNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=952986 WHP40_RS03395 WP_002851309.1 638840..640258(+) (ctsD) [Campylobacter jejuni strain Z1323CCJ0045]
ATGATAAGATTAATATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTT
TGATATCAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTG
TTAAAGATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATT
TTTAATTTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAA
GATTTTTAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGC
AAAGTGAATATAGCGGTAGTTTTGATGATGCAGAAGACAACATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAAT
ATAGAAAAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGC
AGGTCTTATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTA
AAAAACAAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAAT
TTTAATATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAA
TTTGGGTTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTA
ATCCAAAGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATAT
CTTGCCTGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATA
ATAAACGACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAAT
AATCAAACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAAT
TCCAATCCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTA
TAGTAGATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9BM14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.153

100

0.992