Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   ACG4I1_RS11885 Genome accession   NZ_CP172323
Coordinates   2582342..2583346 (+) Length   334 a.a.
NCBI ID   WP_000568491.1    Uniprot ID   Q9KR02
Organism   Vibrio cholerae strain M815     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2577342..2588346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4I1_RS11860 lpxH 2578166..2578906 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  ACG4I1_RS11865 - 2578947..2579441 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  ACG4I1_RS11870 cysS 2579587..2580966 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  ACG4I1_RS11875 ruvC 2581054..2581575 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  ACG4I1_RS11880 ruvA 2581672..2582286 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  ACG4I1_RS11885 ruvB 2582342..2583346 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACG4I1_RS11890 cydA 2583805..2585391 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  ACG4I1_RS11895 cydB 2585409..2586545 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  ACG4I1_RS11900 cydX 2586558..2586665 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  ACG4I1_RS11905 ybgE 2586658..2586975 (+) 318 WP_001286617.1 cyd operon protein YbgE -
  ACG4I1_RS11910 ybgC 2587144..2587551 (+) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  ACG4I1_RS11915 tolQ 2587541..2588224 (+) 684 WP_000123084.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37298.75 Da        Isoelectric Point: 5.0460

>NTDB_id=951669 ACG4I1_RS11885 WP_000568491.1 2582342..2583346(+) (ruvB) [Vibrio cholerae strain M815]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=951669 ACG4I1_RS11885 WP_000568491.1 2582342..2583346(+) (ruvB) [Vibrio cholerae strain M815]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.682

96.108

0.593
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494