Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACG4I1_RS11880 Genome accession   NZ_CP172323
Coordinates   2581672..2582286 (+) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae strain M815     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2576672..2587286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4I1_RS11855 - 2576856..2578070 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  ACG4I1_RS11860 lpxH 2578166..2578906 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  ACG4I1_RS11865 - 2578947..2579441 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  ACG4I1_RS11870 cysS 2579587..2580966 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  ACG4I1_RS11875 ruvC 2581054..2581575 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  ACG4I1_RS11880 ruvA 2581672..2582286 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  ACG4I1_RS11885 ruvB 2582342..2583346 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACG4I1_RS11890 cydA 2583805..2585391 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  ACG4I1_RS11895 cydB 2585409..2586545 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  ACG4I1_RS11900 cydX 2586558..2586665 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  ACG4I1_RS11905 ybgE 2586658..2586975 (+) 318 WP_001286617.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=951668 ACG4I1_RS11880 WP_000580359.1 2581672..2582286(+) (ruvA) [Vibrio cholerae strain M815]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=951668 ACG4I1_RS11880 WP_000580359.1 2581672..2582286(+) (ruvA) [Vibrio cholerae strain M815]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363