Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHO69_RS13090 Genome accession   NZ_CP148108
Coordinates   2847187..2847726 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2842187..2852726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS13070 - 2842511..2842843 (-) 333 WP_020334514.1 hypothetical protein -
  WHO69_RS13075 gspM 2842836..2843486 (-) 651 WP_020334515.1 type II secretion system protein GspM -
  WHO69_RS13080 - 2843483..2844928 (-) 1446 WP_020334516.1 hypothetical protein -
  WHO69_RS13085 csrD 2844940..2846949 (-) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  WHO69_RS13090 ssb 2847187..2847726 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  WHO69_RS13095 qstR 2848004..2848648 (+) 645 WP_020334518.1 LuxR C-terminal-related transcriptional regulator Regulator
  WHO69_RS13100 galU 2848828..2849700 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  WHO69_RS13105 uvrA 2849849..2852671 (+) 2823 WP_020334520.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=950694 WHO69_RS13090 WP_014233117.1 2847187..2847726(-) (ssb) [Vibrio natriegens isolate FELIX_MS472]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=950694 WHO69_RS13090 WP_014233117.1 2847187..2847726(-) (ssb) [Vibrio natriegens isolate FELIX_MS472]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAAGCTCCAAAGCAATCGGCTCCACAA
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469