Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   WHO69_RS13095 Genome accession   NZ_CP148108
Coordinates   2848004..2848648 (+) Length   214 a.a.
NCBI ID   WP_020334518.1    Uniprot ID   A0AAN1CXG3
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843004..2853648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS13080 - 2843483..2844928 (-) 1446 WP_020334516.1 hypothetical protein -
  WHO69_RS13085 csrD 2844940..2846949 (-) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  WHO69_RS13090 ssb 2847187..2847726 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  WHO69_RS13095 qstR 2848004..2848648 (+) 645 WP_020334518.1 LuxR C-terminal-related transcriptional regulator Regulator
  WHO69_RS13100 galU 2848828..2849700 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  WHO69_RS13105 uvrA 2849849..2852671 (+) 2823 WP_020334520.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24489.49 Da        Isoelectric Point: 9.9863

>NTDB_id=950695 WHO69_RS13095 WP_020334518.1 2848004..2848648(+) (qstR) [Vibrio natriegens isolate FELIX_MS472]
MKKSAYARKLFLISMEENTPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYADESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=950695 WHO69_RS13095 WP_020334518.1 2848004..2848648(+) (qstR) [Vibrio natriegens isolate FELIX_MS472]
ATGAAAAAGTCAGCTTACGCCAGAAAGCTATTTCTGATCAGTATGGAAGAGAATACGCCCCAAAAGGTAGCGGCACTGGA
GAAGTACATCGAAATCGGTATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCGAAGCCGAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAATCGCTTGTTCAGTCGATTAAGAATTTGCCACTGGTGTGGAAAAACTTTGAAACA
GTGATTTTTAATGTCCCAAAACGCCTGACTACGGATGAGCTGCTCTCTTTCGGCCAGCTAAAAGGCGTATTCTATGCCGA
CGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACCCATACCGCACCCGCGACCGTGGATCTTACCATTCGGGAATTACAG
GTGTTGCGCTGTCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTATTTGTGAGCGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio campbellii strain DS40M4

87.85

100

0.879
  qstR Vibrio cholerae strain A1552

53.953

100

0.542