Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WGK56_RS08750 Genome accession   NZ_CP148001
Coordinates   1740680..1742209 (+) Length   509 a.a.
NCBI ID   WP_005647634.1    Uniprot ID   A0A0Y7HS02
Organism   Haemophilus influenzae strain AR2632     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1735680..1747209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK56_RS08725 (WGK56_08715) oppC 1736026..1736961 (+) 936 WP_005651799.1 oligopeptide ABC transporter permease OppC -
  WGK56_RS08730 (WGK56_08720) - 1736971..1737942 (+) 972 WP_013526077.1 ABC transporter ATP-binding protein -
  WGK56_RS08735 (WGK56_08725) oppF 1737939..1738937 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  WGK56_RS08740 (WGK56_08730) - 1738977..1739843 (-) 867 WP_005670794.1 VirK/YbjX family protein -
  WGK56_RS08745 (WGK56_08735) yihA 1739948..1740565 (+) 618 WP_015702069.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  WGK56_RS08750 (WGK56_08740) comM 1740680..1742209 (+) 1530 WP_005647634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WGK56_RS08755 (WGK56_08745) deoC 1742243..1742914 (-) 672 WP_015702068.1 deoxyribose-phosphate aldolase -
  WGK56_RS08760 (WGK56_08750) - 1743025..1743528 (+) 504 WP_005651783.1 protein disulfide oxidoreductase -
  WGK56_RS08765 (WGK56_08755) rfaD 1743581..1744507 (+) 927 WP_015702067.1 ADP-glyceromanno-heptose 6-epimerase -
  WGK56_RS08770 (WGK56_08760) xylB 1744558..1746039 (-) 1482 WP_040034663.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55918.45 Da        Isoelectric Point: 9.8668

>NTDB_id=949956 WGK56_RS08750 WP_005647634.1 1740680..1742209(+) (comM) [Haemophilus influenzae strain AR2632]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSVQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=949956 WGK56_RS08750 WP_005647634.1 1740680..1742209(+) (comM) [Haemophilus influenzae strain AR2632]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGCTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCTGCATCGGATCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGTCAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCAAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACCCTT
TTAGATGTAGTGCAATTTCTCAACGGTCAGGAAAAATTACCACTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATCTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACGGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCAGCTTTAGTTGGTGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTAGAGCCAATGCCAAAATTCAATTTCCGGCTCGTTTTCAATTGGTGGC
TGCAATGAATCCAAGCCCCACAGGCCATTATACTGGGACACATAACCGTACTTCACCGCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTATTGCCACAAGGCAGCTTACAAAAT
ACAGGTGATCGTGGCGAAACCAGCGTGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Y7HS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.214

100

0.992
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475