Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WDB99_RS06435 Genome accession   NZ_CP147991
Coordinates   1379471..1380001 (+) Length   176 a.a.
NCBI ID   WP_103086069.1    Uniprot ID   -
Organism   Serratia marcescens isolate 60-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1374471..1385001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDB99_RS06420 (WDB99_06420) maa 1374494..1375051 (+) 558 WP_021505134.1 maltose O-acetyltransferase -
  WDB99_RS06425 (WDB99_06425) - 1375083..1376135 (-) 1053 WP_060560375.1 NAD(P)-dependent alcohol dehydrogenase -
  WDB99_RS06430 (WDB99_06430) uvrA 1376365..1379193 (-) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  WDB99_RS06435 (WDB99_06435) ssb 1379471..1380001 (+) 531 WP_103086069.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WDB99_RS06440 (WDB99_06440) - 1380087..1381043 (-) 957 WP_338910962.1 cyclase family protein -
  WDB99_RS06445 (WDB99_06445) - 1381263..1381475 (-) 213 WP_004936800.1 DUF1471 domain-containing protein -
  WDB99_RS06450 (WDB99_06450) - 1381708..1382457 (-) 750 WP_033631980.1 3-oxoacyl-ACP reductase family protein -
  WDB99_RS06455 (WDB99_06455) - 1382585..1383502 (+) 918 WP_033631981.1 LysR family transcriptional regulator -
  WDB99_RS06460 (WDB99_06460) - 1383558..1383818 (-) 261 WP_048325622.1 YdgH/BhsA/McbA-like domain containing protein -
  WDB99_RS06465 (WDB99_06465) - 1384014..1384457 (+) 444 WP_033631983.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18824.71 Da        Isoelectric Point: 5.2358

>NTDB_id=949896 WDB99_RS06435 WP_103086069.1 1379471..1380001(+) (ssb) [Serratia marcescens isolate 60-6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPSGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=949896 WDB99_RS06435 WP_103086069.1 1379471..1380001(+) (ssb) [Serratia marcescens isolate 60-6]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGTCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGACGTCAGGGCGGCGGCGCACCGTCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.691

100

0.778
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369