Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WE348_RS19565 Genome accession   NZ_CP147978
Coordinates   4532120..4533634 (+) Length   504 a.a.
NCBI ID   WP_278711922.1    Uniprot ID   -
Organism   Alteromonas macleodii strain KD01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4527120..4538634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WE348_RS19550 (WE348_19550) ilvA 4527448..4529001 (-) 1554 WP_338852749.1 threonine ammonia-lyase, biosynthetic -
  WE348_RS19555 (WE348_19555) ilvD 4529001..4530851 (-) 1851 WP_014977810.1 dihydroxy-acid dehydratase -
  WE348_RS19560 (WE348_19560) - 4531294..4531911 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  WE348_RS19565 (WE348_19565) comM 4532120..4533634 (+) 1515 WP_278711922.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WE348_RS19570 (WE348_19570) ilvY 4533655..4534527 (-) 873 WP_156079065.1 HTH-type transcriptional activator IlvY -
  WE348_RS19575 (WE348_19575) ilvC 4534685..4536163 (+) 1479 WP_014951396.1 ketol-acid reductoisomerase -
  WE348_RS19580 (WE348_19580) - 4536297..4537544 (-) 1248 WP_187289704.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54130.73 Da        Isoelectric Point: 6.3255

>NTDB_id=949816 WE348_RS19565 WP_278711922.1 4532120..4533634(+) (comM) [Alteromonas macleodii strain KD01]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAAHEDIALVYPGDNDVEAALVSHATRYPAFDL
QSVYEHLAGNKKLAKGQPFTSRALNSPLSGWDDIIGQEQAKRALVIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRVDIQVEVPRLPDYDLPERANRPD
DSLHATRERVIAARHKQGLRQGKPNGALHAGELADICFLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEDEHAV
SRAHIAEALGYRALDNLIKQLSTS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=949816 WE348_RS19565 WP_278711922.1 4532120..4533634(+) (comM) [Alteromonas macleodii strain KD01]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAGGTAAGTGTAGAGATTCACCTAGCTAA
TGGTTTACCTGCTTTTCAACTGGTCGGCATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGCGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCAGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATTGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTTGT
GGGCGAGCTTGCATTAAACGGCGAAATAAAGCCAGTAAACGGGCTTATTCCTGTGGTAATGGCAGCTGCACACGAAGACA
TTGCGCTCGTATACCCGGGTGATAATGACGTAGAGGCTGCATTGGTTTCTCACGCAACACGCTATCCTGCTTTCGATTTA
CAGTCTGTTTATGAACACCTTGCCGGCAACAAAAAACTTGCTAAAGGCCAACCGTTTACCTCGCGAGCACTTAACAGTCC
CCTTTCAGGGTGGGATGACATTATCGGCCAAGAGCAAGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTGGGCCCTCCTGGCACAGGTAAAAGCCTGCTCGCCAGCCGAATGCTATCGCTATTACCCGATATGAGCGAG
GAAGAAGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCCACATACCCCGCTAACTTTCAACTAGTAGCTGCGATGAATCC
AAGCCCGACGGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGGTTATCGGGACCAC
TGCTTGATAGAGTTGATATACAAGTCGAAGTGCCGCGCCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGACCTGAC
GACTCGTTACACGCAACGCGAGAGCGAGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGTGC
GCTGCACGCAGGTGAGCTTGCCGATATATGCTTCCTAGATGACGCTGATTTGCAGTTTCTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTGTTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCAGATCTTGAAGATGAGCACGCCGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCACTAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.167

100

0.542
  comM Vibrio campbellii strain DS40M4

53.175

100

0.532
  comM Haemophilus influenzae Rd KW20

51.569

100

0.522
  comM Glaesserella parasuis strain SC1401

51.976

100

0.522
  comM Legionella pneumophila str. Paris

45.968

98.413

0.452
  comM Legionella pneumophila strain ERS1305867

45.968

98.413

0.452
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.435