Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   WDW95_RS07640 Genome accession   NZ_CP147857
Coordinates   1544929..1545918 (-) Length   329 a.a.
NCBI ID   WP_167838894.1    Uniprot ID   A0A6H0UHD3
Organism   Lactococcus raffinolactis strain APC3967     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539929..1550918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS07625 pepF 1540526..1542322 (-) 1797 WP_368651396.1 oligoendopeptidase F Regulator
  WDW95_RS07630 mmuM 1542471..1543388 (-) 918 WP_096039406.1 homocysteine S-methyltransferase -
  WDW95_RS07635 - 1543366..1544736 (-) 1371 WP_368651870.1 amino acid permease -
  WDW95_RS07640 coiA 1544929..1545918 (-) 990 WP_167838894.1 competence protein CoiA Machinery gene
  WDW95_RS07645 - 1545995..1546960 (-) 966 WP_061775228.1 Gfo/Idh/MocA family protein -
  WDW95_RS07650 - 1547092..1547712 (-) 621 WP_244165982.1 C40 family peptidase -
  WDW95_RS07655 - 1547826..1549496 (-) 1671 WP_167838906.1 formate--tetrahydrofolate ligase -
  WDW95_RS07660 - 1549677..1550165 (-) 489 WP_368651397.1 MepB family protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 38673.28 Da        Isoelectric Point: 7.1423

>NTDB_id=949001 WDW95_RS07640 WP_167838894.1 1544929..1545918(-) (coiA) [Lactococcus raffinolactis strain APC3967]
MLVAVNEAEQIINLLEFSKSDLTELVGQFLRCPACKSQVRLKNGHVKMPHFAHVNLAACQYYSENESLQHLTLKKRLYHW
FKQTEQVKIEHFLPELQQTPDLLVNETIAIEIQCSHLSIQRLRERTETYRAHGYTVLWLMGKDLWLGQHLTQLKQQLLYL
TQNAGFYYWELDLQREKIRLNYLCHEDLIGRLHYLQREFSFDVGNLLEVLRTPFAASSAKLTDQLSQDIPAFIRSQLYYQ
NPKWLKIQEKYYQNGQNLMTFKNFPIKLYPIGLNLLTHQFEGVVEPAFCQITSDISRYYHHFLAYPQDDGVYPPGFYARA
ETGDGDCKS

Nucleotide


Download         Length: 990 bp        

>NTDB_id=949001 WDW95_RS07640 WP_167838894.1 1544929..1545918(-) (coiA) [Lactococcus raffinolactis strain APC3967]
ATGCTAGTTGCAGTGAATGAAGCAGAACAAATCATCAATTTACTAGAATTTAGCAAGTCGGACCTTACTGAATTGGTAGG
TCAATTTTTGCGTTGTCCTGCTTGCAAAAGTCAGGTACGCTTGAAAAATGGTCATGTAAAAATGCCCCATTTTGCTCACG
TAAATTTAGCAGCCTGTCAATATTATTCGGAGAACGAAAGCCTGCAGCACTTAACCTTAAAAAAACGTTTATATCACTGG
TTCAAGCAAACAGAGCAGGTCAAAATCGAGCATTTTTTACCTGAGTTACAGCAGACGCCTGACTTACTGGTTAATGAAAC
GATTGCGATTGAAATTCAATGCAGTCACCTGTCTATTCAGAGACTGCGTGAGCGGACAGAAACCTATCGAGCTCATGGCT
ACACCGTCCTCTGGCTCATGGGAAAGGATTTATGGTTGGGTCAGCATTTGACGCAACTCAAGCAACAGTTACTCTATTTA
ACCCAGAATGCTGGTTTTTACTATTGGGAGTTGGATTTGCAGCGTGAAAAAATCCGCCTCAACTATCTGTGCCATGAAGA
TTTAATAGGGCGTTTGCATTATTTACAGCGTGAATTTTCCTTCGATGTAGGGAATTTACTTGAGGTGCTTCGAACGCCAT
TTGCGGCAAGCTCAGCCAAATTGACTGACCAGTTATCGCAAGATATTCCAGCATTTATCAGGTCTCAGCTTTATTATCAG
AATCCCAAATGGTTGAAAATTCAAGAAAAGTATTATCAGAATGGGCAAAATTTGATGACGTTCAAAAACTTCCCTATTAA
GTTATATCCGATTGGCTTGAATCTCTTAACGCACCAGTTCGAAGGCGTTGTCGAGCCTGCCTTTTGTCAAATTACAAGCG
ATATCAGTCGCTATTATCACCATTTTCTGGCTTATCCGCAGGATGATGGGGTTTATCCGCCGGGATTTTATGCTAGGGCT
GAGACAGGTGATGGAGATTGTAAAAGCTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0UHD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

52.174

97.872

0.511
  coiA Streptococcus mitis NCTC 12261

44.753

98.48

0.441
  coiA Streptococcus pneumoniae TIGR4

42.901

98.48

0.422
  coiA Streptococcus pneumoniae Rx1

42.901

98.48

0.422
  coiA Streptococcus pneumoniae D39

42.901

98.48

0.422
  coiA Streptococcus pneumoniae R6

42.901

98.48

0.422