Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   WDW95_RS07625 Genome accession   NZ_CP147857
Coordinates   1540526..1542322 (-) Length   598 a.a.
NCBI ID   WP_368651396.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain APC3967     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535526..1547322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDW95_RS07610 - 1538067..1538567 (-) 501 WP_061775233.1 LURP-one-related/scramblase family protein -
  WDW95_RS07615 - 1538810..1539724 (-) 915 WP_368651395.1 foldase -
  WDW95_RS07620 - 1539829..1540533 (-) 705 WP_096039404.1 O-methyltransferase -
  WDW95_RS07625 pepF 1540526..1542322 (-) 1797 WP_368651396.1 oligoendopeptidase F Regulator
  WDW95_RS07630 mmuM 1542471..1543388 (-) 918 WP_096039406.1 homocysteine S-methyltransferase -
  WDW95_RS07635 - 1543366..1544736 (-) 1371 WP_368651870.1 amino acid permease -
  WDW95_RS07640 coiA 1544929..1545918 (-) 990 WP_167838894.1 competence protein CoiA Machinery gene
  WDW95_RS07645 - 1545995..1546960 (-) 966 WP_061775228.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68123.88 Da        Isoelectric Point: 4.4867

>NTDB_id=949000 WDW95_RS07625 WP_368651396.1 1540526..1542322(-) (pepF) [Lactococcus raffinolactis strain APC3967]
MVKKREAIDEKYKWDLTTIFATDEAFEAELAEVLTALEDARNLAGTLTDSAENLLAVTDTELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTALYAKLSEVFAFYEPEFMTLSQERFAQFVIDQPKLQTYGHFFEQLFDRKAHVLSSAEEALLAGA
SEIFGAGAETFEILDNADIVFPTIRDAQGQDVQLSHGNYISFMESSNREVRKAAYQALYSIYEQYQHTYAKTLQTNVKVH
NFTAKTRHYHSAREAALSTNHIPEAVYDTLVQAVNDHLPLLHRYIQLRSDILKIDDLKMYDVYAPLSTTDYKFTYEEAVV
KTQGTLAIFGPDYLEKVKRSFEENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRES
QPYVYGDYSIFLAEIASTTNENILTETLLHDVEDDETRFAVLNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSEF
LNQQYAELNEKYYGLAASDNPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIVNGTEQDKADYLNYLRAGSSDYPL
DVIAKAGVDMTSADYLTAAFAVFEKRLTELEALVAKHG

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=949000 WDW95_RS07625 WP_368651396.1 1540526..1542322(-) (pepF) [Lactococcus raffinolactis strain APC3967]
ATGGTAAAAAAACGTGAAGCAATTGATGAAAAATATAAATGGGATCTGACGACAATTTTTGCAACAGATGAGGCTTTTGA
AGCGGAACTCGCAGAGGTTTTAACTGCACTAGAGGATGCTAGAAACTTAGCTGGTACCCTGACAGATTCTGCAGAAAATT
TATTAGCAGTGACTGATACGGAGTTGGCGCTCATGCAACGGGTAGAAAAGCTCTATGTCTATGCGTCAATGAAAAATGAC
CAGGATACAACGGTTAGTCTTTATCAAGAATATCAAGCAAAAGTAACAGCGCTCTATGCTAAATTAAGTGAAGTTTTTGC
TTTCTATGAACCTGAGTTTATGACTTTGTCGCAAGAAAGGTTTGCGCAGTTTGTCATTGATCAACCTAAATTACAAACTT
ATGGGCACTTCTTTGAGCAGTTGTTTGACAGAAAAGCTCATGTTTTGTCAAGCGCAGAAGAAGCCTTACTAGCTGGTGCG
TCAGAGATTTTCGGTGCAGGTGCTGAAACCTTTGAAATCTTAGATAATGCAGATATCGTCTTTCCAACGATTAGGGATGC
GCAAGGTCAAGACGTGCAGCTGTCACATGGTAACTATATTTCATTCATGGAATCATCGAATCGTGAGGTCAGAAAAGCAG
CCTATCAAGCACTCTATAGCATCTATGAACAATATCAGCATACCTATGCCAAGACGCTACAAACTAACGTCAAAGTCCAT
AACTTCACAGCTAAAACACGCCATTATCACTCAGCACGTGAAGCGGCTTTGTCCACTAACCACATCCCAGAAGCGGTTTA
TGACACTTTAGTTCAAGCGGTCAATGACCACCTGCCTCTGCTTCACCGTTATATCCAACTGCGCTCTGATATCCTGAAAA
TTGATGACCTAAAAATGTATGATGTCTATGCCCCTTTGTCAACGACAGATTATAAATTTACCTATGAAGAGGCAGTCGTT
AAAACTCAAGGCACACTTGCGATTTTCGGCCCAGATTATCTGGAAAAAGTTAAACGCAGCTTTGAAGAAAACTGGATTGA
TGTTCAGGAGAATAAAGGCAAGCGCTCAGGTGCCTATTCAGGTGGTTCATATGATACCAACGCCTTCATGCTTCTCAACT
GGCAGGATACGCTAGATAATCTCTTTACTTTGGTGCACGAGATGGGCCATAGCATGCACAGTAGCTTTACCCGCGAAAGC
CAGCCTTATGTCTACGGTGACTACAGCATCTTCCTCGCTGAAATAGCTTCGACAACTAATGAAAATATCCTCACAGAAAC
CTTGCTCCATGATGTTGAGGATGATGAGACGAGATTCGCGGTGCTCAACCACTTCTTGGATGGCTTTAGAGGCACTGTCT
TTAGACAAACGCAGTTTGCTGAGTTCGAGCATGCCATTCATGAGGCAGATGCTGCAGGAACCGTCTTAACCAGCGAGTTC
TTAAACCAACAATATGCCGAGTTAAATGAAAAATATTACGGCCTAGCTGCAAGTGATAACCCAGAAATCCAGTACGAATG
GGCTAGAATCCCACATTTCTACTACAATTACTATGTTTTCCAATATGCGACAGGTTTTGCAGCAGCATCTGCCTTGGCAG
ATAAAATCGTGAATGGAACTGAGCAAGATAAGGCAGACTATCTGAATTACTTGCGAGCTGGTTCGTCAGACTATCCGCTA
GATGTCATTGCCAAAGCGGGTGTTGATATGACGTCAGCTGATTATCTTACTGCTGCTTTTGCAGTTTTTGAAAAACGCTT
GACAGAATTAGAAGCATTGGTGGCGAAACATGGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.275

99.666

0.661