Detailed information NTG0948375

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: WDV80_RS05765
• Genome accession: NZ_CP147733
• Coordinates: 1161356..1161769 (-)
• Length: 137 a.a.
• NCBI ID: WP_000244261.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SagR272_TC
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1156356..1166769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDV80_RS05725 (WDV80_05725)	-	1156957..1157412 (-)	456	WP_000905673.1	hypothetical protein	-
WDV80_RS05730 (WDV80_05730)	-	1157453..1157590 (-)	138	WP_001865900.1	hypothetical protein	-
WDV80_RS05735 (WDV80_05735)	-	1157649..1157855 (-)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
WDV80_RS05740 (WDV80_05740)	-	1158007..1159200 (-)	1194	WP_000047534.1	acetate kinase	-
WDV80_RS05745 (WDV80_05745)	comYH	1159232..1160206 (-)	975	WP_001008574.1	N-6 DNA methylase	Machinery gene
WDV80_RS05750 (WDV80_05750)	comGG	1160321..1160692 (-)	372	WP_000601104.1	competence type IV pilus minor pilin ComGG	-
WDV80_RS05755 (WDV80_05755)	comGF	1160670..1161131 (-)	462	WP_001874812.1	competence type IV pilus minor pilin ComGF	-
WDV80_RS05760 (WDV80_05760)	comGE	1161085..1161384 (-)	300	WP_000234804.1	competence type IV pilus minor pilin ComGE	-
WDV80_RS05765 (WDV80_05765)	comYD	1161356..1161769 (-)	414	WP_000244261.1	competence type IV pilus minor pilin ComGD	Machinery gene
WDV80_RS05770 (WDV80_05770)	comGC/cglC	1161744..1162073 (-)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
WDV80_RS05775 (WDV80_05775)	comYB	1162070..1163113 (-)	1044	WP_223295889.1	competence type IV pilus assembly protein ComGB	Machinery gene
WDV80_RS05780 (WDV80_05780)	comYA	1163007..1163978 (-)	972	WP_000250805.1	competence type IV pilus ATPase ComGA	Machinery gene
WDV80_RS05785 (WDV80_05785)	-	1164151..1164516 (-)	366	WP_000285373.1	DUF1033 family protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15968.43 Da
• Isoelectric Point: 9.9787

>NTDB_id=948375 WDV80_RS05765 WP_000244261.1 1161356..1161769(-) (comYD) [Streptococcus agalactiae strain SagR272_TC]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDTNGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=948375 WDV80_RS05765 WP_000244261.1 1161356..1161769(-) (comYD) [Streptococcus agalactiae strain SagR272_TC]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACACTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394