Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   WDV80_RS04675 Genome accession   NZ_CP147733
Coordinates   968870..969904 (-) Length   344 a.a.
NCBI ID   WP_000732713.1    Uniprot ID   A0AAV3JGP6
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 963870..974904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS04640 (WDV80_04640) - 964621..964923 (-) 303 WP_001065560.1 YlxQ-related RNA-binding protein -
  WDV80_RS04645 (WDV80_04645) - 964916..965212 (-) 297 WP_001140526.1 YlxR family protein -
  WDV80_RS04650 (WDV80_04650) nusA 965234..966385 (-) 1152 WP_000032295.1 transcription termination factor NusA -
  WDV80_RS04655 (WDV80_04655) rimP 966421..966897 (-) 477 WP_041971671.1 ribosome maturation factor RimP -
  WDV80_RS04665 (WDV80_04665) trmB 967387..968022 (-) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  WDV80_RS04670 (WDV80_04670) - 968012..968812 (-) 801 WP_000155919.1 phosphotransferase family protein -
  WDV80_RS04675 (WDV80_04675) pptB 968870..969904 (-) 1035 WP_000732713.1 ABC transporter permease Regulator
  WDV80_RS04680 (WDV80_04680) pptA 969906..970631 (-) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  WDV80_RS04685 (WDV80_04685) - 970703..970888 (+) 186 WP_000368100.1 hypothetical protein -
  WDV80_RS04690 (WDV80_04690) - 970940..971443 (-) 504 WP_000773453.1 hypothetical protein -
  WDV80_RS04695 (WDV80_04695) - 971779..972198 (+) 420 WP_000368097.1 HIT family protein -
  WDV80_RS04700 (WDV80_04700) - 972195..972491 (+) 297 WP_000690175.1 hypothetical protein -
  WDV80_RS04705 (WDV80_04705) - 972555..973862 (-) 1308 WP_000708156.1 LCP family protein -
  WDV80_RS04710 (WDV80_04710) - 973871..974392 (-) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  WDV80_RS04715 (WDV80_04715) tsaE 974385..974828 (-) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40206.54 Da        Isoelectric Point: 10.4988

>NTDB_id=948367 WDV80_RS04675 WP_000732713.1 968870..969904(-) (pptB) [Streptococcus agalactiae strain SagR272_TC]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSQLLKDFPKTHWPIIVIVSIIILMLLAMGGIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHFDYQYMNQLYPVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=948367 WDV80_RS04675 WP_000732713.1 968870..969904(-) (pptB) [Streptococcus agalactiae strain SagR272_TC]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAACGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCAGTTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGGAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGTTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTAATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAAGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAACTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ACTATTAGCTTTAGGTCACCATTTTGATTATCAATACATGAATCAGCTCTATCCAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATAGCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-159)

Bacterial ABC transporter protein EcsB (EcsB)

(147-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

48.547

100

0.485
  pptB Streptococcus salivarius strain HSISS4

48.256

100

0.483