Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NGK57_RS01595 | Genome accession | NZ_AP025847 |
| Coordinates | 335536..336066 (+) | Length | 176 a.a. |
| NCBI ID | WP_006177466.1 | Uniprot ID | A0AAE4E8Q4 |
| Organism | Enterobacter hormaechei strain FUJ80063 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 330536..341066
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK57_RS01575 (FJMB80063_03030) | aphA | 330860..331573 (+) | 714 | WP_017382626.1 | acid phosphatase AphA | - |
| NGK57_RS01580 (FJMB80063_03040) | - | 331686..332102 (+) | 417 | WP_017382627.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| NGK57_RS01585 (FJMB80063_03050) | - | 332105..332458 (+) | 354 | WP_032646878.1 | MmcQ/YjbR family DNA-binding protein | - |
| NGK57_RS01590 (FJMB80063_03060) | uvrA | 332462..335284 (-) | 2823 | WP_003860287.1 | excinuclease ABC subunit UvrA | - |
| NGK57_RS01595 (FJMB80063_03070) | ssb | 335536..336066 (+) | 531 | WP_006177466.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| NGK57_RS01600 (FJMB80063_03080) | - | 336225..337472 (+) | 1248 | WP_047058417.1 | site-specific integrase | - |
| NGK57_RS01605 (FJMB80063_03090) | - | 337459..338997 (+) | 1539 | WP_048984036.1 | site-specific integrase | - |
| NGK57_RS01610 (FJMB80063_03100) | - | 339014..341047 (+) | 2034 | WP_032646881.1 | integrase | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18835.84 Da Isoelectric Point: 5.2456
>NTDB_id=94673 NGK57_RS01595 WP_006177466.1 335536..336066(+) (ssb) [Enterobacter hormaechei strain FUJ80063]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=94673 NGK57_RS01595 WP_006177466.1 335536..336066(+) (ssb) [Enterobacter hormaechei strain FUJ80063]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
76.667 |
100 |
0.784 |
| ssb | Glaesserella parasuis strain SC1401 |
56.216 |
100 |
0.591 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.472 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.472 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.364 |