Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WCU31_RS21940 Genome accession   NZ_CP147521
Coordinates   4514896..4515426 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain GN02777     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4509896..4520426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU31_RS21905 (WCU31_21905) - 4510337..4510780 (-) 444 WP_047570370.1 lipocalin-like domain-containing protein -
  WCU31_RS21910 (WCU31_21910) - 4510977..4511237 (+) 261 WP_049201479.1 YdgH/BhsA/McbA-like domain containing protein -
  WCU31_RS21915 (WCU31_21915) - 4511293..4512210 (-) 918 WP_110158508.1 LysR family transcriptional regulator -
  WCU31_RS21920 (WCU31_21920) - 4512343..4513092 (+) 750 WP_338858734.1 3-oxoacyl-ACP reductase family protein -
  WCU31_RS21925 (WCU31_21925) - 4513130..4513606 (-) 477 WP_338858735.1 Rrf2 family transcriptional regulator -
  WCU31_RS21930 (WCU31_21930) - 4513764..4514144 (+) 381 WP_049278419.1 hypothetical protein -
  WCU31_RS21935 (WCU31_21935) - 4514156..4514866 (+) 711 WP_126179229.1 class I SAM-dependent methyltransferase -
  WCU31_RS21940 (WCU31_21940) ssb 4514896..4515426 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WCU31_RS21945 (WCU31_21945) uvrA 4515704..4518532 (+) 2829 WP_338858736.1 excinuclease ABC subunit UvrA -
  WCU31_RS21950 (WCU31_21950) - 4518862..4519668 (+) 807 WP_174137282.1 MipA/OmpV family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=946628 WCU31_RS21940 WP_004936793.1 4514896..4515426(-) (ssb) [Serratia marcescens strain GN02777]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=946628 WCU31_RS21940 WP_004936793.1 4514896..4515426(-) (ssb) [Serratia marcescens strain GN02777]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGGCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCCCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364