Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WBM82_RS19010 Genome accession   NZ_CP147494
Coordinates   3587285..3588007 (-) Length   240 a.a.
NCBI ID   WP_128993465.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3582285..3593007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS18975 (WBM82_19025) fliW 3582425..3582856 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WBM82_RS18980 (WBM82_19030) yviE 3582877..3583452 (-) 576 WP_014481045.1 DUF6470 family protein -
  WBM82_RS18985 (WBM82_19035) flgL 3583499..3584395 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  WBM82_RS18990 (WBM82_19040) flgK 3584406..3585929 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WBM82_RS18995 (WBM82_19045) flgN 3585948..3586430 (-) 483 WP_014481048.1 flagellar protein FlgN -
  WBM82_RS19000 (WBM82_19050) flgM 3586446..3586712 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  WBM82_RS19005 (WBM82_19055) yvyF 3586793..3587212 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  WBM82_RS19010 (WBM82_19060) comFC 3587285..3588007 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  WBM82_RS19015 (WBM82_19065) comFB 3587971..3588267 (-) 297 WP_015483764.1 late competence protein ComFB -
  WBM82_RS19020 (WBM82_19070) comFA 3588327..3589718 (-) 1392 WP_217024082.1 ATP-dependent helicase ComFA Machinery gene
  WBM82_RS19025 (WBM82_19075) fakBA 3589824..3590669 (-) 846 WP_076457520.1 DegV family protein -
  WBM82_RS19030 (WBM82_19080) degU 3590770..3591459 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WBM82_RS19035 (WBM82_19085) degS 3591542..3592699 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27405.67 Da        Isoelectric Point: 9.4913

>NTDB_id=946450 WBM82_RS19010 WP_128993465.1 3587285..3588007(-) (comFC) [Bacillus subtilis strain YT1]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKAYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=946450 WBM82_RS19010 WP_128993465.1 3587285..3588007(-) (comFC) [Bacillus subtilis strain YT1]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGCTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979