Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WAX86_RS00300 Genome accession   NZ_CP146970
Coordinates   64548..66080 (+) Length   510 a.a.
NCBI ID   WP_106223518.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 59548..71080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX86_RS00285 (WAX86_00285) - 61133..62062 (-) 930 WP_065171002.1 branched-chain amino acid transaminase -
  WAX86_RS00290 (WAX86_00290) ilvM 62102..62359 (-) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  WAX86_RS00295 (WAX86_00295) ilvG 62362..64008 (-) 1647 WP_341488975.1 acetolactate synthase 2 catalytic subunit -
  WAX86_RS00300 (WAX86_00300) comM 64548..66080 (+) 1533 WP_106223518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WAX86_RS00305 (WAX86_00305) - 66140..66739 (-) 600 WP_370469096.1 thiol:disulfide interchange protein DsbA/DsbL -
  WAX86_RS00310 (WAX86_00310) - 66829..67818 (-) 990 WP_341488976.1 serine/threonine protein kinase -
  WAX86_RS00315 (WAX86_00315) ccoG 67861..69198 (-) 1338 WP_138242679.1 cytochrome c oxidase accessory protein CcoG -
  WAX86_RS00320 (WAX86_00320) - 69387..69653 (-) 267 WP_005302176.1 YihD family protein -
  WAX86_RS00325 (WAX86_00325) - 69829..70002 (-) 174 WP_005302173.1 hypothetical protein -
  WAX86_RS00330 (WAX86_00330) - 70383..71057 (+) 675 WP_065171008.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55106.43 Da        Isoelectric Point: 8.2787

>NTDB_id=945196 WAX86_RS00300 WP_106223518.1 64548..66080(+) (comM) [Photobacterium damselae subsp. damselae strain WMD-P2]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDLRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=945196 WAX86_RS00300 WP_106223518.1 64548..66080(+) (comM) [Photobacterium damselae subsp. damselae strain WMD-P2]
ATGTCATTGGCCATTGTGCATAGTCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTCACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCGCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCGGCTTCAGGACAAATACCCGCAGAATCGCTGCATAAATATGAATTTTT
AGGGGAGTTGGCCTTATCGGGGCAATTGCGTCCGGTAAAGGGGGCATTGCCTGCTGCTCTTGCTGCATTAAAGGCGAAAA
GGTGCTTGATTGTTCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGCGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCTGGTG
GCCATAATCTTCTATTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGAGCACCTCATCATTCAAGTTCTATGGCTGCCTTAGTTGGAGGGGGTTCAATTCCAAGGCCTGGAGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGAGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCAGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AACTCTCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCTGCTCTGCCGAAAGGTACTTTAGCTCAAGGT
GGCGAGCGCGGTGAGAGCACTCCTGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCTGCGAGCAGGAAA
AGTGAATGCTCGACTCTCTACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCACCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCAATGGATCGATTATTGAAGCAATTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427