Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V9K84_RS22670 Genome accession   NZ_CP146966
Coordinates   4945061..4946551 (-) Length   496 a.a.
NCBI ID   WP_088514611.1    Uniprot ID   -
Organism   Pseudomonas sp. AE27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4940061..4951551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9K84_RS22655 (V9K84_22655) - 4941357..4942406 (+) 1050 WP_338792656.1 M48 family metallopeptidase -
  V9K84_RS22660 (V9K84_22660) - 4942372..4943172 (+) 801 WP_338792658.1 tetratricopeptide repeat protein -
  V9K84_RS22665 (V9K84_22665) - 4943176..4944960 (-) 1785 WP_088514610.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  V9K84_RS22670 (V9K84_22670) comM 4945061..4946551 (-) 1491 WP_088514611.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V9K84_RS22675 (V9K84_22675) - 4946865..4947128 (-) 264 WP_043863349.1 accessory factor UbiK family protein -
  V9K84_RS22680 (V9K84_22680) glnK 4947470..4947808 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  V9K84_RS22685 (V9K84_22685) - 4947850..4949175 (+) 1326 WP_043863350.1 ammonium transporter -
  V9K84_RS22690 (V9K84_22690) sutA 4949641..4949964 (+) 324 WP_043863351.1 transcriptional regulator SutA -
  V9K84_RS22695 (V9K84_22695) - 4950125..4950820 (-) 696 WP_043863355.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52935.89 Da        Isoelectric Point: 7.7168

>NTDB_id=945152 V9K84_RS22670 WP_088514611.1 4945061..4946551(-) (comM) [Pseudomonas sp. AE27]
MSLALVHSRAQVGVLAPAVTIEAHLANGLPNLTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQMPIASLHAVECLGELALSGAVRCVQGVLPAALAAREAGRALVVPRENAEEACLASGLVVYAVDHL
LELVAHLNGQQPLEPYKANGLVLHSQPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLNE
REALEVAAIQSVASPLPLNSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYHGDPTGRCRCSSDQIQRYRNKLSGPLLDRIDLHLTVAREATALSHCTDN
GPASAHIAGQVAAARERQQQRQGCANAFLELPGLRQHCALSADDQHWLETACERLTLSLRAAHRLLKVARTLADLEQAAH
IARVHLAEALQYRPGP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=945152 V9K84_RS22670 WP_088514611.1 4945061..4946551(-) (comM) [Pseudomonas sp. AE27]
ATGTCCCTCGCCCTTGTCCACAGCCGCGCCCAGGTGGGCGTACTGGCCCCTGCGGTCACCATCGAAGCGCACCTGGCCAA
CGGCCTGCCCAACCTGACCCTGGTCGGCCTGCCCGAAGCCACGGTAAAGGAAAGCAAGGACCGTGTGCGCAGCGCCATCC
TCAACTCCGGCCTGGAGTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGACGC
TTCGACCTGGCCATAGCCCTGGGCATCCTGGCCGCCAACGGGCAGATGCCGATCGCCTCGCTGCACGCAGTGGAATGCCT
GGGCGAGCTGGCGCTGTCGGGGGCGGTGCGCTGCGTGCAGGGCGTGCTGCCGGCCGCCCTTGCGGCCCGCGAAGCCGGGC
GCGCGCTGGTGGTGCCACGGGAGAATGCCGAGGAGGCCTGCCTGGCTTCGGGCCTGGTGGTGTACGCCGTAGACCACCTG
CTGGAGCTGGTCGCGCACCTCAACGGCCAGCAGCCCCTCGAACCCTACAAGGCCAACGGCCTGGTCCTGCACAGCCAGCC
CTACCCCGACCTCAACGAGGTGCAGGGCCAGCTCGCCGCCAAGCGTGCCCTGCTGGTCGCGGCGGCCGGGGCCCACAACC
TGCTGTTCAGCGGGCCACCCGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCACCGCTGAACGAG
CGCGAAGCGCTGGAAGTGGCGGCCATCCAGTCGGTCGCCAGCCCGCTGCCGCTCAACAGCTGGCCGCAGCGTCCGTTTCG
CCACCCGCATCACTCGGCGTCGGGGGCCGCACTGGTCGGCGGTGGCAGCCGCCCGCAACCCGGCGAGATCACCCTGGCCC
ACCATGGCGTGCTGTTTCTGGATGAGTTGCCGGAGTTCGAGCGGCGCGTGCTGGAAGTGCTGCGCGAGCCCCTGGAATCG
GGCGAAATCGTGATCGCCCGGGCCAAGGACAAGATCCGCTTCCCGGCCCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCATGGCGACCCCACCGGTCGCTGTCGATGCAGCAGCGACCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGCCCGTTGCTTGATCGCATCGACCTGCACCTGACCGTCGCCCGTGAAGCCACGGCGCTCTCGCACTGCACCGACAAC
GGCCCCGCCAGTGCCCACATCGCAGGGCAGGTGGCTGCCGCACGCGAACGACAACAACAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGAGCTGCCCGGCCTGCGCCAGCACTGCGCACTGTCCGCTGACGATCAGCACTGGCTGGAAACCGCGTGCGAAC
GACTAACCTTGTCGCTACGGGCCGCGCACCGCCTGCTCAAGGTGGCGCGTACGCTGGCCGATCTGGAACAGGCCGCACAC
ATTGCGCGCGTGCACCTGGCCGAGGCCCTGCAGTACCGCCCCGGGCCTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.798

0.56
  comM Vibrio campbellii strain DS40M4

55.422

100

0.556
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Glaesserella parasuis strain SC1401

54.274

100

0.55
  comM Legionella pneumophila str. Paris

49.102

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.102

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.931

100

0.478