Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   WAC51_RS16450 Genome accession   NZ_CP146845
Coordinates   3589162..3590220 (-) Length   352 a.a.
NCBI ID   WP_338712888.1    Uniprot ID   -
Organism   Stenotrophomonas geniculata strain WXY53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3584162..3595220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAC51_RS16430 (WAC51_16430) - 3585091..3587064 (-) 1974 WP_019659995.1 type IV pilus secretin PilQ family protein -
  WAC51_RS16435 (WAC51_16435) - 3587086..3587592 (-) 507 WP_010484064.1 pilus assembly protein PilP -
  WAC51_RS16440 (WAC51_16440) pilO 3587619..3588275 (-) 657 WP_049410131.1 type 4a pilus biogenesis protein PilO -
  WAC51_RS16445 (WAC51_16445) - 3588272..3589162 (-) 891 WP_010484062.1 PilN domain-containing protein -
  WAC51_RS16450 (WAC51_16450) pilM 3589162..3590220 (-) 1059 WP_338712888.1 pilus assembly protein PilM Machinery gene
  WAC51_RS16455 (WAC51_16455) - 3590440..3592863 (+) 2424 WP_338712889.1 penicillin-binding protein 1A -
  WAC51_RS16460 (WAC51_16460) - 3593223..3593867 (+) 645 WP_012511978.1 hypothetical protein -
  WAC51_RS16465 (WAC51_16465) - 3594044..3594787 (-) 744 WP_338712890.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37739.38 Da        Isoelectric Point: 4.4089

>NTDB_id=944668 WAC51_RS16450 WP_338712888.1 3589162..3590220(-) (pilM) [Stenotrophomonas geniculata strain WXY53]
MGLIPKSQSPLVGVDVSSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=944668 WAC51_RS16450 WP_338712888.1 3589162..3590220(-) (pilM) [Stenotrophomonas geniculata strain WXY53]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACGTCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAACCGTTTTCGTGTGGAACATTACGCCGTGGAACCTCTTCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAAAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGG
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGAGGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGTGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGTGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCAGGCAGCGAGTTCAACCGCGTTGACCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTCGGCGGGCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472