Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   V7A41_RS00705 Genome accession   NZ_CP146746
Coordinates   147168..147584 (+) Length   138 a.a.
NCBI ID   WP_019291446.1    Uniprot ID   -
Organism   Lactococcus petauri strain L4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142168..152584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A41_RS00680 (V7A41_00680) guaB 142998..144479 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  V7A41_RS00685 (V7A41_00685) rpsU 144605..144781 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  V7A41_RS00690 (V7A41_00690) comGA 144967..145911 (+) 945 WP_019291447.1 competence type IV pilus ATPase ComGA Machinery gene
  V7A41_RS00695 (V7A41_00695) comGB 145850..146869 (+) 1020 WP_255566838.1 competence type IV pilus assembly protein ComGB Machinery gene
  V7A41_RS00700 (V7A41_00700) comYC 146888..147193 (+) 306 WP_153924350.1 competence type IV pilus major pilin ComGC Machinery gene
  V7A41_RS00705 (V7A41_00705) comGD 147168..147584 (+) 417 WP_019291446.1 competence type IV pilus minor pilin ComGD Machinery gene
  V7A41_RS00710 (V7A41_00710) comGE 147616..147849 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  V7A41_RS00715 (V7A41_00715) comGF 147830..148270 (+) 441 WP_019291444.1 competence type IV pilus minor pilin ComGF -
  V7A41_RS00720 (V7A41_00720) - 148502..149347 (+) 846 WP_019291443.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  V7A41_RS00725 (V7A41_00725) - 149418..150302 (-) 885 WP_019291442.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15743.32 Da        Isoelectric Point: 9.9391

>NTDB_id=944035 V7A41_RS00705 WP_019291446.1 147168..147584(+) (comGD) [Lactococcus petauri strain L4]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSAKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKNISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=944035 V7A41_RS00705 WP_019291446.1 147168..147584(+) (comGD) [Lactococcus petauri strain L4]
ATGCAAAATGTAATGTATCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGCCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAAACATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362