Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V4331_RS02520 Genome accession   NZ_CP146743
Coordinates   506998..508002 (+) Length   334 a.a.
NCBI ID   WP_341784317.1    Uniprot ID   -
Organism   Lactococcus formosensis subsp. formosensis strain L5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 501998..513002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4331_RS02500 (V4331_02505) - 502382..503086 (+) 705 WP_096368588.1 Bax inhibitor-1/YccA family protein -
  V4331_RS02505 (V4331_02510) - 503136..503960 (-) 825 WP_341784314.1 HAD family hydrolase -
  V4331_RS02510 (V4331_02515) - 504323..505744 (+) 1422 WP_341784315.1 NCS2 family permease -
  V4331_RS02515 (V4331_02520) - 505822..506922 (+) 1101 WP_341784316.1 YdcF family protein -
  V4331_RS02520 (V4331_02525) coiA 506998..508002 (+) 1005 WP_341784317.1 competence protein CoiA family protein Machinery gene
  V4331_RS02525 (V4331_02530) pepF 507986..509791 (+) 1806 WP_165711381.1 oligoendopeptidase F Regulator
  V4331_RS02530 (V4331_02535) - 509791..510474 (+) 684 WP_096368583.1 O-methyltransferase -
  V4331_RS02535 (V4331_02540) - 510572..511480 (+) 909 WP_017368906.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 40045.96 Da        Isoelectric Point: 8.1941

>NTDB_id=944010 V4331_RS02520 WP_341784317.1 506998..508002(+) (coiA) [Lactococcus formosensis subsp. formosensis strain L5]
MLNALDKDGNTINLFDDKPINPSFYCPACKSSLRLKRGKIKIPHFAHISLQNCDSWSESESAQHLGLKLSLYQWLKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKKTLSSLQKNLLYYSVERGF
YFWELDWDRKKLRLKSLIHQDLKGRLICLTEEFDFFQESLLELLRQPFLKGENLSIDVPEQEELQFFIQKQLYYQVPKWI
KVQEKYYEQGKNLLDLNWKKCYWAPPGLNLLTFDFINERRESFFQVDTSLEKYYQGFYESFQSQEHERLHTPSYYAIIKD
KNKVKNGEWHGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=944010 V4331_RS02520 WP_341784317.1 506998..508002(+) (coiA) [Lactococcus formosensis subsp. formosensis strain L5]
ATGTTGAATGCATTGGATAAAGACGGAAATACAATTAATCTCTTTGATGATAAACCCATTAATCCCTCTTTTTATTGCCC
AGCTTGCAAGTCGTCCCTGCGTTTAAAAAGAGGAAAGATAAAAATACCTCACTTTGCGCACATATCTTTACAAAATTGTG
ATTCTTGGAGTGAAAGCGAATCTGCACAACATCTGGGTTTAAAACTTAGCTTATACCAATGGCTTAAGGAAAAAGAGAAA
GTAGAGCTAGAAAAATATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCCATCGAAATACA
GTGTTCGCCACTCTCTTTACAACGTTTAGAAGAGAGAACGGTAAGCTACAAAGAAAAGGGATATTATGTACTTTGGCTTC
AAGGAAGGGATTTGTGGCTCAAGAAGACCTTATCATCGCTACAGAAAAATTTGCTCTATTATTCAGTAGAGCGAGGTTTT
TACTTTTGGGAGTTAGATTGGGACAGAAAGAAGCTACGTTTAAAATCATTGATTCATCAGGATTTAAAAGGTCGACTGAT
ATGTCTTACGGAAGAGTTTGATTTTTTCCAAGAGAGTCTCTTAGAACTCTTACGTCAGCCTTTTCTCAAAGGAGAAAATC
TTAGTATAGATGTACCAGAGCAAGAAGAGTTACAGTTTTTTATTCAAAAACAACTGTATTATCAAGTGCCAAAATGGATT
AAAGTGCAGGAAAAATATTATGAACAGGGTAAAAATTTGTTAGATCTCAACTGGAAGAAATGTTACTGGGCACCTCCAGG
ACTAAACTTATTGACCTTTGACTTTATAAACGAAAGAAGAGAAAGTTTTTTTCAAGTGGATACTTCCTTAGAAAAATATT
ATCAAGGCTTCTACGAAAGTTTTCAGTCACAAGAACATGAAAGACTGCATACACCAAGCTACTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGCATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.829

98.204

0.509
  coiA Streptococcus pneumoniae Rx1

42.073

98.204

0.413
  coiA Streptococcus pneumoniae D39

42.073

98.204

0.413
  coiA Streptococcus pneumoniae R6

42.073

98.204

0.413
  coiA Streptococcus pneumoniae TIGR4

41.768

98.204

0.41
  coiA Streptococcus mitis NCTC 12261

41.463

98.204

0.407