Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V4331_RS02525 Genome accession   NZ_CP146743
Coordinates   507986..509791 (+) Length   601 a.a.
NCBI ID   WP_165711381.1    Uniprot ID   -
Organism   Lactococcus formosensis subsp. formosensis strain L5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 502986..514791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4331_RS02505 (V4331_02510) - 503136..503960 (-) 825 WP_341784314.1 HAD family hydrolase -
  V4331_RS02510 (V4331_02515) - 504323..505744 (+) 1422 WP_341784315.1 NCS2 family permease -
  V4331_RS02515 (V4331_02520) - 505822..506922 (+) 1101 WP_341784316.1 YdcF family protein -
  V4331_RS02520 (V4331_02525) coiA 506998..508002 (+) 1005 WP_341784317.1 competence protein CoiA family protein Machinery gene
  V4331_RS02525 (V4331_02530) pepF 507986..509791 (+) 1806 WP_165711381.1 oligoendopeptidase F Regulator
  V4331_RS02530 (V4331_02535) - 509791..510474 (+) 684 WP_096368583.1 O-methyltransferase -
  V4331_RS02535 (V4331_02540) - 510572..511480 (+) 909 WP_017368906.1 peptidyl-prolyl cis-trans isomerase -
  V4331_RS02540 (V4331_02545) alaS 511730..514348 (+) 2619 WP_341784318.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69828.24 Da        Isoelectric Point: 4.5653

>NTDB_id=944011 V4331_RS02525 WP_165711381.1 507986..509791(+) (pepF) [Lactococcus formosensis subsp. formosensis strain L5]
MAKKRDEIAENLTWDLSTVFENDAAWELELKSVSEKLETVNRYEGHLLESAQSLLEITEVELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEARATNLYAKFGEMFAFYEPEFLALTPERYESFRREEPKLEQYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKDRHVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKTRGYDSARQAALSSNFIPEEVYDRLLESVNKYLPLLHRYIKLREQILGLDDDLKMYDVYTPLSDLDYKFNYPEAV
EKAEEVLQVFGPEYAAHVKKAFDERWIDVAENIGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAETTDEKERFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLPALENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGSEAREKYLTYLKAGSSDYP
LAVIAQAGVDMEEITYLESAFAVFEKRLIELENLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=944011 V4331_RS02525 WP_165711381.1 507986..509791(+) (pepF) [Lactococcus formosensis subsp. formosensis strain L5]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACCGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGTGTCTCGGAAAAGTTAGAGACGGTAAACCGCTACGAAGGACATCTTTTAGAGAGTGCTCAAAGCT
TATTAGAAATCACGGAAGTTGAGCTAGAGATTTCGCGCGCTGTGGAAAAAGTTTATGTCTATGCTTCAATGAAGCATGAT
CAAGATACACAAGTGAGTCGTTACCAAGAATATGAAGCTAGGGCTACAAATTTATATGCTAAGTTCGGTGAAATGTTTGC
CTTTTATGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAGAGTTTTAGAAGAGAAGAACCTAAGTTGGAACAGT
ATTCTCATATGTTTGAACGCCTTTTTGCTAAAAAAGAGCATATTTTAAGTCCAAAAGAGGAAAAGCTGTTAGCCAGTGCC
AGTGAGATTTTTGGTGCAGCTGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACATGGTAATTATATCTCGCTCATGGAAAGTAAGGACCGTCATGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGACACGTGGGTATGATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAGGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTACGCGAGCAAATTTTAGGTT
TAGATGATGATTTGAAGATGTATGATGTCTACACACCCTTATCTGACTTGGATTATAAGTTTAACTATCCAGAAGCAGTA
GAGAAAGCAGAAGAAGTTCTTCAAGTTTTCGGCCCTGAGTATGCAGCACATGTTAAAAAAGCTTTTGATGAGCGTTGGAT
TGATGTAGCAGAAAATATTGGCAAACGTTCTGGTGCATACTCGGGAGGATGCTATGATACAAATGCCTTTATGCTCTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTTACCTTAGTTCATGAAATGGGACACAGTATGCATTCTACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTCTTGCAGAAATTGCCTCAACAACCAATGAAAATATCTTGACGGA
AAGTTTACTTGCGGAGACGACAGATGAAAAAGAGCGTTTTGCCATTTTAAACCACTGGCTTGATGGCTTCCGGGGAACCG
TTTTTCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAGGTCTTGACCAGTGAA
TTCATGAACCAGCTCTACGCAGGTCTTAATGAGAAGTATTATGGTTTGCCTGCTCTAGAAAATCCTGAAATTCAGTACGA
GTGGGCACGCATTCCACATTTTTATTATAATTATTATGTTTTCCAATATGCAACAGGCTTTGCAGCAGCAACTTATCTTG
CAGAGGCTATCGTAAATGGTGGCTCAGAAGCGCGTGAAAAATACCTCACTTATCTCAAAGCTGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTAGATATGGAAGAAATAACGTATTTAGAATCGGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTGGAAAATTTAGTCGAAAAAGGAGTCCATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.058

100

0.651