Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RdKW20_RS03970 Genome accession   NZ_CP146693
Coordinates   775468..775974 (-) Length   168 a.a.
NCBI ID   WP_005694052.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 770468..780974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RdKW20_RS03935 (RdKW20_000739) raiA 770685..771008 (-) 324 WP_005653397.1 ribosome-associated translation inhibitor RaiA -
  RdKW20_RS03940 (RdKW20_000740) bamC 771178..771825 (-) 648 WP_005694048.1 outer membrane protein assembly factor BamC -
  RdKW20_RS03945 (RdKW20_000741) dapA 771936..772832 (-) 897 WP_005648859.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RdKW20_RS03950 (RdKW20_000742) bcp 772933..773400 (+) 468 WP_005694049.1 thioredoxin-dependent thiol peroxidase -
  RdKW20_RS03955 (RdKW20_000743) exbB 773569..774021 (+) 453 WP_005648856.1 TonB-system energizer ExbB -
  RdKW20_RS03960 (RdKW20_000744) exbD 774025..774468 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  RdKW20_RS03965 (RdKW20_000745) - 774478..775290 (+) 813 WP_005694051.1 energy transducer TonB -
  RdKW20_RS03970 (RdKW20_000746) ssb 775468..775974 (-) 507 WP_005694052.1 single-stranded DNA-binding protein Machinery gene
  RdKW20_RS03975 (RdKW20_000747) uvrA 776128..778959 (+) 2832 WP_005694053.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18753.55 Da        Isoelectric Point: 5.2649

>NTDB_id=943849 RdKW20_RS03970 WP_005694052.1 775468..775974(-) (ssb) [Haemophilus influenzae strain Rd-KW20]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGAPQSSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=943849 RdKW20_RS03970 WP_005694052.1 775468..775974(-) (ssb) [Haemophilus influenzae strain Rd-KW20]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGTAATGATATGGGCGGTGCGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAAGCTGCACCACAGGCTGAGCCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

54.945

100

0.595
  ssb Neisseria meningitidis MC58

51.445

100

0.53
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

34.831

100

0.369