Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V9K82_RS25215 Genome accession   NZ_CP146690
Coordinates   5430817..5432307 (+) Length   496 a.a.
NCBI ID   WP_144189505.1    Uniprot ID   -
Organism   Pseudomonas juntendi strain L4008hy     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5425817..5437307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9K82_RS25195 (V9K82_25195) - 5426156..5427487 (-) 1332 WP_029887805.1 ammonium transporter -
  V9K82_RS25200 (V9K82_25200) glnK 5427534..5427872 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  V9K82_RS25205 (V9K82_25205) - 5428257..5428523 (+) 267 WP_009681642.1 accessory factor UbiK family protein -
  V9K82_RS25210 (V9K82_25210) - 5428547..5430559 (-) 2013 WP_115295071.1 DUF4034 domain-containing protein -
  V9K82_RS25215 (V9K82_25215) comM 5430817..5432307 (+) 1491 WP_144189505.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V9K82_RS25220 (V9K82_25220) - 5432353..5432721 (-) 369 WP_009681637.1 response regulator -
  V9K82_RS25225 (V9K82_25225) - 5432718..5433710 (-) 993 WP_144189507.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52791.57 Da        Isoelectric Point: 7.9199

>NTDB_id=943794 V9K82_RS25215 WP_144189505.1 5430817..5432307(+) (comM) [Pseudomonas juntendi strain L4008hy]
MSLALVHSRAQVGVQAPAVSVETHLTNGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQLPTAALAELECLGELALSGTLRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLAVYAVGHL
LELVAHLNGQVPLAPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHAPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPSG
ETSAAVAVKVAQARALQHGRQACANAFLDLEGLRRHCALKAADQVWLENACERLTLSLRAAHRLLKVARTLADLEGCETI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=943794 V9K82_RS25215 WP_144189505.1 5430817..5432307(+) (comM) [Pseudomonas juntendi strain L4008hy]
ATGTCCCTAGCCCTCGTCCATAGCCGCGCCCAGGTGGGCGTACAGGCACCGGCGGTCAGCGTCGAAACGCACCTGACCAA
TGGCCTGCCGCACCTCACCCTGGTCGGCCTACCGGAAACCACCGTCAAGGAAAGCAAAGACCGGGTACGCAGCGCCATCG
TCAATTCCGGGTTGAACTACCCACAACGGCGCATCACCCAGAACCTGGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TACGACCTGGCCATTGCCTTGGGCATCCTCGCCGCCGACGGTCAACTGCCAACCGCGGCCCTTGCCGAGCTTGAATGCCT
GGGCGAACTGGCACTGTCTGGCACGTTGCGCCCGGTGCAGGGGGTATTGCCGGCGGCACTCGCGGCCCGCGAAGCAGGCC
GGGCGCTGGTGGTACCACGGGAAAACGCCGAGGAGGCCAGCCTGGCCAGCGGCCTGGCGGTGTATGCCGTGGGGCACTTG
CTGGAGCTGGTTGCCCACCTCAACGGCCAGGTGCCCCTGGCGCCTTATGCGGCCAACGGTTTGATCCTGCAGCAACGGCC
GTACCCGGACCTGAGCGAGGTGCAAGGGCAACTGGCGGCCAAGCGCGCCTTGCTGCTGGCAGCTGCCGGGGCGCACAACC
TGTTGTTCACCGGCCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGGCTGCCCGGGCTGCTGCCGCCGCTGGACGAG
CACGAGGCGCTGGAAGTGGCGGCGATCCAGTCGGTCAGCGGCCATGCACCGCTGAGCAGCTGGCCGCAGCGCCCCTTTCG
CCACCCGCACCACTCCGCCTCCGGCCCGGCACTGGTGGGGGGCAGCAGCCGGCCGCAACCTGGCGAAATCACCCTCGCTC
ACCACGGTGTGCTGTTCCTTGACGAGCTGCCGGAATTCGAGCGCCGCGTGCTGGAGGTGTTACGCGAGCCGTTGGAGTCC
GGTGAAATCGTGATTGCCCGGGCCCGCGACAAGGTACGCTTTCCCGCGCGCTTTCAGCTGGTGGCGGCCATGAACCCCTG
CCCGTGCGGCTACCTCGGCGACCCAACCGGCCGTTGCCGCTGCAGCACCGAGCAGATCGCCCGCTATCGCAACAAACTGT
CCGGGCCACTGCTGGACCGCATCGACCTGCACCTGACCGTGGCCCGCGAAAGCACCACGCTGAACAACCAGCCTAGCGGT
GAAACCAGTGCCGCTGTGGCTGTGAAAGTGGCACAGGCCCGAGCGCTGCAACACGGGCGTCAGGCCTGCGCGAATGCCTT
CCTCGATCTCGAAGGTTTACGCCGGCATTGTGCCTTGAAAGCCGCCGACCAGGTCTGGCTTGAAAATGCCTGCGAGCGGC
TGACGTTATCGCTGCGCGCGGCACACCGGTTGTTGAAGGTAGCGCGAACGCTGGCGGACCTGGAGGGGTGCGAGACCATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTATCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

54.092

100

0.546
  comM Vibrio cholerae strain A1552

54.747

99.798

0.546
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

100

0.47