Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V6Z91_RS11855 Genome accession   NZ_CP146614
Coordinates   2679521..2681032 (-) Length   503 a.a.
NCBI ID   WP_338770572.1    Uniprot ID   -
Organism   Massilia sp. METH4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2674521..2686032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z91_RS11840 - 2677920..2678225 (-) 306 WP_338770569.1 hypothetical protein -
  V6Z91_RS11845 - 2678528..2678878 (-) 351 WP_338770570.1 DUF1840 domain-containing protein -
  V6Z91_RS11850 - 2678957..2679460 (-) 504 WP_338770571.1 hypothetical protein -
  V6Z91_RS11855 comM 2679521..2681032 (-) 1512 WP_338770572.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V6Z91_RS11860 - 2681129..2681383 (-) 255 WP_338770574.1 accessory factor UbiK family protein -
  V6Z91_RS11865 - 2681590..2682339 (+) 750 WP_338770575.1 TorF family putative porin -
  V6Z91_RS11870 - 2682359..2682697 (+) 339 WP_130186246.1 P-II family nitrogen regulator -
  V6Z91_RS11875 amt 2682716..2684242 (+) 1527 WP_338770579.1 ammonium transporter -
  V6Z91_RS11880 gshA 2684415..2685713 (+) 1299 WP_338770581.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54160.08 Da        Isoelectric Point: 8.5921

>NTDB_id=943397 V6Z91_RS11855 WP_338770572.1 2679521..2681032(-) (comM) [Massilia sp. METH4]
MSLAVLKSRALNGIEAPEVSVEVHLAGGLPAFAIVGLADTEVKEARERVRAAIANAGFEMPNHRIIVNLAPADLPKESGR
FDLPIALGILAASGQIPAPPLSRYEFAGELSLTGELRPIRGALAMTFAMQRARTRGAIVLPLANADEAALVDGAAVYPAA
TLLEVCNHFRAADDSARLARHRPAPPPALAGHPDFAEVKGQWHAKRALEVAAAGGHSLLMMGPPGSGKTMLASRFPGLLP
AMTNDEALEAAAVQSLTGGFKASAWKVRPFRAPHHTSSGVALVGGGSVPRPGEISLAHCGVLFLDELPEFDRRVLEVLRE
PLESGRVTISRAARQAEFPARFQLVAAMNPCPCGYYGHLSGKCKCSQDTIGRYQDRISGPLLDRIDMQIEVGAVPTETLD
TVEDGEPTQAIAARVQAAFERQLERQGKSNRYLTSREIDRYCKPDRGGQDTLHKSMLQFHWSARAYHRVLRVARTIADLA
GSDTVQARHVGEAVQFRRVLRQL

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=943397 V6Z91_RS11855 WP_338770572.1 2679521..2681032(-) (comM) [Massilia sp. METH4]
ATGAGCCTGGCCGTCCTGAAAAGCCGTGCGCTGAACGGCATCGAAGCGCCTGAAGTCAGCGTCGAAGTGCACCTGGCCGG
CGGCTTGCCGGCCTTTGCCATCGTCGGGCTTGCCGACACCGAAGTGAAGGAAGCGCGCGAGCGCGTGCGCGCGGCGATCG
CCAACGCCGGCTTCGAAATGCCGAACCACCGCATTATCGTCAATCTGGCGCCAGCCGACCTGCCCAAGGAATCGGGCCGT
TTCGACTTGCCTATCGCGCTCGGCATCCTGGCCGCGTCCGGCCAGATCCCCGCTCCCCCGCTGTCCCGTTATGAATTCGC
CGGTGAACTGTCGCTAACCGGCGAGCTGCGCCCCATCCGCGGCGCGCTGGCCATGACGTTTGCCATGCAGCGGGCCCGCA
CCCGCGGCGCCATCGTCCTGCCATTGGCCAATGCGGACGAGGCGGCACTCGTCGATGGTGCGGCGGTGTATCCCGCCGCG
ACGTTGCTCGAAGTCTGCAACCACTTCCGCGCGGCGGACGACAGCGCCCGGCTTGCGCGGCATCGCCCGGCGCCCCCGCC
GGCCCTGGCCGGGCATCCTGACTTCGCCGAAGTGAAAGGCCAGTGGCACGCGAAACGGGCGCTCGAAGTGGCGGCAGCCG
GTGGCCACAGCTTATTGATGATGGGCCCGCCGGGTTCGGGCAAGACCATGCTGGCGTCCCGCTTTCCCGGCCTGCTGCCC
GCGATGACGAACGACGAAGCCCTGGAAGCGGCCGCCGTACAGTCGCTGACGGGCGGTTTCAAGGCCTCCGCGTGGAAGGT
GCGGCCGTTTCGCGCCCCGCATCACACATCCTCCGGCGTTGCGCTGGTGGGCGGCGGCAGCGTGCCGAGGCCAGGCGAAA
TCTCGCTGGCGCATTGCGGCGTGCTGTTCCTGGACGAGTTGCCGGAATTCGACCGCCGCGTGCTGGAAGTACTGCGCGAA
CCGCTCGAATCGGGCCGGGTAACGATCTCCCGTGCGGCCCGCCAGGCCGAGTTCCCCGCCCGGTTCCAGCTGGTGGCGGC
GATGAATCCCTGCCCTTGCGGCTACTACGGGCACCTCTCTGGCAAGTGCAAATGCTCGCAAGACACGATCGGCCGTTACC
AGGACCGCATTTCCGGCCCGCTGCTGGACCGGATCGACATGCAGATCGAGGTCGGTGCGGTGCCGACCGAGACGCTGGAC
ACGGTGGAGGATGGAGAGCCGACGCAAGCGATCGCGGCGCGCGTACAGGCGGCGTTCGAACGGCAACTGGAACGGCAAGG
CAAGAGCAATCGCTACCTGACGTCGCGCGAAATCGACCGCTACTGCAAGCCCGACCGTGGTGGCCAGGACACACTGCACA
AGTCGATGCTGCAATTCCACTGGTCGGCACGCGCCTATCACCGCGTGCTGCGGGTGGCGCGGACGATCGCCGACCTCGCC
GGCTCGGACACGGTACAGGCCAGGCACGTGGGCGAGGCTGTGCAATTTCGCCGCGTGCTGCGACAGCTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-397)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.063

100

0.527
  comM Vibrio cholerae strain A1552

51.969

100

0.525
  comM Glaesserella parasuis strain SC1401

50.581

100

0.519
  comM Haemophilus influenzae Rd KW20

50.099

100

0.505
  comM Legionella pneumophila str. Paris

49.603

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.603

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.465