Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V9W64_RS02825 Genome accession   NZ_CP146598
Coordinates   617855..619345 (-) Length   496 a.a.
NCBI ID   WP_274584552.1    Uniprot ID   A0A9X4E0M0
Organism   Neisseria leonii strain 51.81     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 612855..624345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W64_RS02800 (V9W64_02800) hisD 613217..614521 (+) 1305 WP_274584548.1 histidinol dehydrogenase -
  V9W64_RS02805 (V9W64_02805) - 614678..615181 (-) 504 WP_274584549.1 DUF1841 family protein -
  V9W64_RS02815 (V9W64_02815) - 616241..616933 (-) 693 WP_274584550.1 thiol:disulfide interchange protein DsbA/DsbL -
  V9W64_RS02820 (V9W64_02820) - 616950..617729 (-) 780 WP_274584551.1 SPOR domain-containing protein -
  V9W64_RS02825 (V9W64_02825) comM 617855..619345 (-) 1491 WP_274584552.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V9W64_RS02830 (V9W64_02830) - 619391..619669 (-) 279 WP_274584553.1 accessory factor UbiK family protein -
  V9W64_RS02835 (V9W64_02835) ung 619769..620440 (-) 672 WP_274584554.1 uracil-DNA glycosylase -
  V9W64_RS02840 (V9W64_02840) - 620792..622768 (+) 1977 WP_274584555.1 choline BCCT transporter BetT -
  V9W64_RS02845 (V9W64_02845) waaF 622885..623898 (+) 1014 WP_274584556.1 lipopolysaccharide heptosyltransferase II -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52864.03 Da        Isoelectric Point: 8.6179

>NTDB_id=943256 V9W64_RS02825 WP_274584552.1 617855..619345(-) (comM) [Neisseria leonii strain 51.81]
MTWAVVYSRALSGMSAPLVEVEVHLANGLPQFNIVGLPDTEVKESRDRVRAAIVQSGFDMPAKKITVNLAPADLPKESGR
FDLPIAVGILAASGQVLSDKLADYELAGELALSGALRPVRGALAMAWQGAKDKRAFILPAENAAQTALLKDLTAYGAACL
GEVAAHLNGIAPLQAVPGGIRPFESRPLPDLAEVKGQHTARLALEIAAAGGHSLLMVGPPGTGKSMLAQRLPGILPPLSD
EETISVWALRSLLPLHLQDSSTERPFRAPHHSASAVALVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLEN
GEIHISRAARQATFPARFQLVAAMNPCPCGYFGHPAKPCRCTPERIAAYRSKISGPLLDRIDLTIEVPALPAAELAQARP
GEASAAVKIRVEAARGRQYARQGKTNAQLSVAELDTVARIEPEAAQVLSGLLEKLSLSARSYHRILRVARTLADLAGDER
VGRVHVLRAVSFRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=943256 V9W64_RS02825 WP_274584552.1 617855..619345(-) (comM) [Neisseria leonii strain 51.81]
ATGACATGGGCGGTGGTGTACAGCCGCGCATTGAGCGGCATGAGTGCGCCTTTGGTCGAAGTGGAAGTCCATTTGGCCAA
CGGGCTGCCGCAGTTTAATATTGTGGGCCTGCCGGATACCGAAGTGAAGGAAAGCCGCGACCGCGTGCGCGCGGCGATTG
TCCAGAGCGGCTTTGATATGCCGGCGAAAAAAATTACCGTCAATCTGGCACCGGCCGACCTGCCCAAGGAGTCAGGCCGC
TTCGACCTGCCGATTGCCGTCGGTATTTTGGCGGCATCGGGGCAGGTATTGTCCGATAAACTGGCCGATTACGAGTTGGC
GGGCGAGCTGGCACTGTCCGGCGCGCTGCGGCCGGTACGCGGCGCGTTGGCTATGGCCTGGCAGGGTGCGAAAGACAAAC
GCGCCTTTATCCTGCCGGCGGAAAATGCCGCACAGACGGCATTGCTGAAAGATTTAACGGCATACGGCGCGGCTTGCCTG
GGCGAAGTGGCCGCCCATCTGAACGGTATCGCGCCGTTGCAGGCGGTACCGGGCGGCATCAGGCCGTTTGAATCCCGTCC
TTTGCCCGATTTGGCCGAAGTCAAAGGCCAGCATACTGCGCGGCTGGCATTGGAAATTGCCGCAGCCGGCGGACACAGTC
TGCTGATGGTCGGCCCGCCCGGTACGGGTAAATCCATGCTGGCGCAACGATTGCCGGGCATTCTGCCGCCGTTGAGCGAC
GAAGAAACGATTTCGGTGTGGGCATTGCGCTCGCTGCTGCCGCTTCATTTGCAGGACAGCAGTACCGAGCGGCCGTTCCG
TGCCCCGCACCACAGTGCCAGCGCGGTGGCTTTGGTCGGCGGCGGTTCCGATCCGCGCCCCGGCGAAATTTCCCTGGCGC
ACCACGGTGTACTGTTTCTCGACGAGCTGCCCGAATTCGACCGCAAAGTGCTGGAAGTATTGCGCGAGCCGCTGGAAAAC
GGCGAAATCCATATTTCGCGTGCTGCCCGTCAGGCCACATTTCCGGCGCGTTTCCAACTGGTTGCCGCCATGAACCCCTG
TCCGTGCGGCTATTTCGGCCATCCGGCCAAGCCCTGCCGCTGTACTCCCGAACGCATCGCGGCTTACCGCAGCAAAATTT
CCGGCCCGCTGTTGGACCGTATCGATTTAACGATTGAAGTGCCTGCGTTACCGGCGGCCGAGCTGGCTCAGGCACGTCCG
GGCGAGGCGAGTGCCGCAGTCAAAATCCGGGTGGAAGCCGCGCGCGGCCGACAATATGCCCGTCAGGGCAAAACCAACGC
ACAATTGAGCGTGGCCGAATTGGACACCGTTGCCCGGATTGAGCCCGAAGCTGCGCAGGTATTGAGCGGGCTGCTGGAAA
AGCTGTCGCTGTCCGCGCGCAGCTACCACCGCATTTTGAGGGTGGCGCGCACATTGGCCGATTTGGCGGGCGATGAACGG
GTCGGCCGCGTCCATGTGTTACGTGCCGTAAGTTTCCGCAGAGCTTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.61

100

0.528
  comM Vibrio campbellii strain DS40M4

52.323

99.798

0.522
  comM Glaesserella parasuis strain SC1401

50.797

100

0.514
  comM Haemophilus influenzae Rd KW20

50.701

100

0.51
  comM Legionella pneumophila str. Paris

48

100

0.484
  comM Legionella pneumophila strain ERS1305867

48

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.511

100

0.45