Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V6P94_RS03665 Genome accession   NZ_CP146343
Coordinates   803785..805278 (+) Length   497 a.a.
NCBI ID   WP_338649029.1    Uniprot ID   -
Organism   Pseudomonas sp. ML2-2023-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 798785..810278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6P94_RS03630 (V6P94_03630) sutA 799347..799673 (-) 327 WP_095027614.1 transcriptional regulator SutA -
  V6P94_RS03635 (V6P94_03635) - 800155..801492 (-) 1338 WP_133075036.1 ammonium transporter -
  V6P94_RS03640 (V6P94_03640) glnK 801527..801865 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  V6P94_RS03645 (V6P94_03645) - 802282..802542 (+) 261 WP_133075037.1 accessory factor UbiK family protein -
  V6P94_RS03650 (V6P94_03650) - 802588..803016 (+) 429 WP_133075038.1 VOC family protein -
  V6P94_RS03655 (V6P94_03655) - 803018..803323 (-) 306 WP_048352553.1 HigA family addiction module antitoxin -
  V6P94_RS03660 (V6P94_03660) - 803331..803609 (-) 279 WP_133075039.1 type II toxin-antitoxin system RelE/ParE family toxin -
  V6P94_RS03665 (V6P94_03665) comM 803785..805278 (+) 1494 WP_338649029.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V6P94_RS03670 (V6P94_03670) - 805288..806208 (-) 921 WP_133075041.1 LysR substrate-binding domain-containing protein -
  V6P94_RS03675 (V6P94_03675) - 806361..807761 (+) 1401 WP_133075042.1 NorM family multidrug efflux MATE transporter -
  V6P94_RS03680 (V6P94_03680) - 807908..809575 (-) 1668 WP_133075043.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53030.61 Da        Isoelectric Point: 8.0999

>NTDB_id=942633 V6P94_RS03665 WP_338649029.1 803785..805278(+) (comM) [Pseudomonas sp. ML2-2023-3]
MALAIVYSRAQVGVEAPAVMVEAHLANGLPALTLVGLPEAAVKESKDRVRSAILNCGLDFPARRITLNLAPADLPKDGGR
FDVAIALGILAASGQIPAAALEQVECLGELALSGAIRSVQGVLPAALAARAAGRALVVPLANAEEACLASGLEVIAVEHL
LQLVAHFAAREVIEPYVASGLLQLSKPYPDLIDVQGQLSAKRALLIAAAGSHNLLFCGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIQSVVSHVPLNCWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMKS
GFIVIARARDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTSLNPPLAS
GDTTAISAALVAAARERQLQRQGCANAFLDLPGVRTQCRLSEVDNAWLETACERMTLSLRAAHRILKVARTLADLEQLQG
IERRHLAQALQYRPVTG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=942633 V6P94_RS03665 WP_338649029.1 803785..805278(+) (comM) [Pseudomonas sp. ML2-2023-3]
ATGGCTCTGGCTATCGTTTACAGCCGCGCCCAGGTGGGTGTCGAGGCGCCTGCCGTCATGGTCGAGGCGCATCTGGCCAA
TGGATTACCCGCGTTAACACTGGTCGGCTTGCCTGAAGCGGCCGTCAAGGAAAGCAAAGACCGGGTGCGCAGCGCGATCC
TCAATTGCGGGCTGGATTTCCCGGCCCGGCGAATCACTCTTAATCTGGCGCCCGCCGATCTGCCCAAGGACGGCGGGCGT
TTTGATGTGGCCATTGCCCTGGGAATCCTGGCGGCCAGCGGGCAAATACCGGCCGCAGCGTTGGAGCAGGTGGAGTGCCT
GGGCGAATTGGCGTTGTCGGGTGCAATCAGGTCTGTCCAGGGCGTTTTGCCAGCGGCGTTGGCGGCCCGTGCTGCGGGAC
GGGCCCTGGTGGTGCCGCTGGCCAATGCCGAAGAGGCCTGCCTTGCATCCGGGCTTGAAGTGATCGCGGTCGAGCACTTG
TTGCAGCTGGTGGCACATTTCGCAGCGCGTGAGGTGATTGAGCCTTATGTCGCCAGCGGTTTATTGCAGTTGAGCAAACC
TTATCCTGATCTGATCGATGTCCAGGGGCAGCTTTCGGCAAAGCGGGCGTTATTGATTGCCGCCGCAGGCAGCCACAATC
TGTTGTTTTGCGGCCCGCCCGGTACCGGCAAGACCTTGTTGGCCAGCCGCCTGCCCGGGTTGTTGCCGCCGCTCAACGAA
CAAGAGGCGCTTGAGGTTGCGGCCATTCAGTCGGTGGTCAGCCATGTGCCGCTGAACTGCTGGCCACAGCGCCCGTTTCG
TCAGCCTCACCACTCGGCCTCCGGCCCTGCACTGGTGGGGGGCGGCTCAAAGCCACAGCCCGGCGAGATCACGCTGGCGC
ATCACGGCGTGTTGTTTCTTGATGAGCTTCCCGAGTTTGATCGCAAGGTGCTGGAAGTCCTCAGGGAGCCAATGAAGTCC
GGCTTTATCGTGATTGCCCGCGCCCGGGATCGAATGCGCTTTCCGGCGCGCTTCCAACTGGTCGCGGCCATGAACCCCTG
CCCCTGTGGATATCTTGGTGAGCCCACAGGCCGCTGCCGTTGTACCCCGGAGCAGATCCAGCGGTATCGCAACAAACTTT
CCGGACCGTTGCTCGACCGCATTGATTTGCATCTGACCGTGGCGCGCGAGACCACGTCGCTCAACCCGCCCCTTGCCTCT
GGCGATACCACGGCCATCTCGGCGGCATTGGTGGCAGCAGCACGTGAGCGCCAGTTACAGCGTCAGGGGTGTGCCAATGC
CTTTCTCGATCTGCCGGGGGTGCGTACACAGTGCCGGCTGAGTGAGGTGGACAACGCCTGGCTGGAGACCGCCTGCGAGC
GGATGACGTTGTCGCTGCGGGCGGCACACCGGATATTGAAGGTGGCAAGGACCTTGGCCGATCTGGAGCAGCTGCAAGGC
ATTGAGCGCAGGCACCTGGCGCAGGCGTTGCAGTATCGGCCGGTAACAGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

53.8

100

0.541
  comM Vibrio cholerae strain A1552

54.141

99.598

0.539
  comM Glaesserella parasuis strain SC1401

52.988

100

0.535
  comM Legionella pneumophila str. Paris

48.119

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.119

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.533

100

0.451