Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SOV_RS21260 Genome accession   NZ_CP146301
Coordinates   4317740..4318267 (-) Length   175 a.a.
NCBI ID   WP_081658625.1    Uniprot ID   -
Organism   Sporomusa ovata DSM 2662     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4312740..4323267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOV_RS21225 (SOV_42200) - 4313125..4314210 (-) 1086 WP_152524003.1 hypothetical protein -
  SOV_RS21230 - 4314348..4314683 (-) 336 WP_258955102.1 TolC family protein -
  SOV_RS21235 - 4314843..4315217 (-) 375 Protein_4050 TolC family protein -
  SOV_RS21240 (SOV_42220) - 4315239..4315475 (-) 237 WP_021169424.1 hypothetical protein -
  SOV_RS21245 - 4315776..4316030 (-) 255 WP_152524004.1 hypothetical protein -
  SOV_RS21250 (SOV_42230) - 4316214..4316681 (-) 468 WP_021169425.1 helix-turn-helix transcriptional regulator -
  SOV_RS21255 (SOV_42240) - 4316874..4317494 (-) 621 WP_021169426.1 TetR/AcrR family transcriptional regulator -
  SOV_RS21260 (SOV_42250) rcrQ 4317740..4318267 (-) 528 WP_081658625.1 ATP-binding cassette domain-containing protein Regulator
  SOV_RS21265 (SOV_42260) - 4318581..4318949 (-) 369 WP_021169428.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SOV_RS21270 (SOV_42270) - 4318912..4319241 (-) 330 WP_021169429.1 hypothetical protein -
  SOV_RS21275 (SOV_42280) - 4320084..4320575 (+) 492 WP_021169430.1 Lrp/AsnC ligand binding domain-containing protein -
  SOV_RS21280 (SOV_42290) - 4320572..4321738 (+) 1167 WP_021169431.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  SOV_RS21285 (SOV_42300) - 4321842..4322795 (-) 954 WP_021169432.1 P1 family peptidase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19458.12 Da        Isoelectric Point: 5.6953

>NTDB_id=942627 SOV_RS21260 WP_081658625.1 4317740..4318267(-) (rcrQ) [Sporomusa ovata DSM 2662]
MSRSQLRSMLGMVLQDAWLFGGTIEQNIAYSRENATKQEVIQAAKAARVDRFIRTLPAGYQTVLDDEAANISQGQRQLIT
IARAILADPAILILDEATSNVDTRTELEIQKAMNTLMKGRTSFIIAHRLSTVRDADHILVVKNGTIIEQGTHSELMEQNS
FYAELYNSQFASTAV

Nucleotide


Download         Length: 528 bp        

>NTDB_id=942627 SOV_RS21260 WP_081658625.1 4317740..4318267(-) (rcrQ) [Sporomusa ovata DSM 2662]
ATGAGCCGGAGCCAACTTCGATCCATGCTGGGCATGGTATTGCAGGATGCCTGGCTATTCGGCGGAACTATTGAACAAAA
TATTGCCTACAGCCGGGAAAATGCGACTAAACAGGAAGTAATACAAGCCGCTAAAGCCGCCAGGGTAGATCGTTTTATCC
GTACATTGCCGGCTGGTTATCAAACAGTCCTAGATGATGAGGCGGCTAATATCTCCCAAGGTCAGAGACAGTTGATCACC
ATTGCCAGAGCCATTCTTGCCGACCCGGCTATATTGATACTGGATGAAGCGACCTCTAATGTAGATACGCGCACCGAGCT
TGAAATCCAAAAAGCGATGAATACTCTAATGAAGGGTCGGACCAGCTTTATAATTGCGCATAGGCTTTCCACCGTTCGTG
ATGCCGATCATATTCTAGTAGTGAAAAACGGCACAATAATTGAACAGGGAACCCATTCCGAACTTATGGAACAAAATAGC
TTTTATGCAGAGTTATACAATAGCCAGTTTGCTTCAACTGCAGTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(3-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.588

97.143

0.589
  comA/nlmT Streptococcus mutans UA159

40

97.143

0.389
  comA Streptococcus gordonii str. Challis substr. CH1

38.462

96.571

0.371
  comA Streptococcus mitis SK321

38.462

96.571

0.371
  comA Streptococcus pneumoniae TIGR4

37.87

96.571

0.366
  comA Streptococcus mitis NCTC 12261

37.87

96.571

0.366
  comA Streptococcus pneumoniae Rx1

37.87

96.571

0.366
  comA Streptococcus pneumoniae D39

37.87

96.571

0.366
  comA Streptococcus pneumoniae R6

37.87

96.571

0.366