Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V8Z64_RS02140 Genome accession   NZ_CP146298
Coordinates   299481..299759 (-) Length   92 a.a.
NCBI ID   WP_005143991.1    Uniprot ID   A0AAU8W6T2
Organism   Shigella sonnei strain R16.0823     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 297425..299394 299481..299759 flank 87


Gene organization within MGE regions


Location: 297425..299759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Z64_RS02130 (V8Z64_02155) istB 297425..298222 (-) 798 WP_000544828.1 IS21-like element IS21 family helper ATPase IstB -
  V8Z64_RS02135 (V8Z64_02160) istA 298222..299394 (-) 1173 WP_000952382.1 IS21-like element IS21 family transposase -
  V8Z64_RS02140 (V8Z64_02165) comM 299481..299759 (-) 279 WP_005143991.1 ATP-binding protein Machinery gene

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10551.99 Da        Isoelectric Point: 9.1950

>NTDB_id=942591 V8Z64_RS02140 WP_005143991.1 299481..299759(-) (comM) [Shigella sonnei strain R16.0823]
MAASPGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNR
LSGPFLDRCQRQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=942591 V8Z64_RS02140 WP_005143991.1 299481..299759(-) (comM) [Shigella sonnei strain R16.0823]
TTGGCAGCATCACCCGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCC
GATTGAATCCGGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGA
TGAATCCCAGCCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGG
CTCTCGGGGCCCTTTCTCGACCGCTGTCAGCGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(3-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

76.744

93.478

0.717
  comM Glaesserella parasuis strain SC1401

74.419

93.478

0.696
  comM Vibrio cholerae strain A1552

63.953

93.478

0.598
  comM Vibrio campbellii strain DS40M4

62.791

93.478

0.587
  comM Legionella pneumophila str. Paris

57.778

97.826

0.565
  comM Legionella pneumophila strain ERS1305867

57.778

97.826

0.565
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.425

94.565

0.467