Detailed information NTG0942510

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSGK_RS28920
• Genome accession: NZ_CP146285
• Coordinates: 6378142..6379011 (-)
• Length: 289 a.a.
• NCBI ID: WP_374979912.1
• Uniprot ID: -
• Organism: Pseudomonas solani strain GK13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6373142..6384011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSGK_RS28880 (PSGK_28730)	-	6374435..6374608 (-)	174	WP_021221826.1	DUF3094 family protein	-
PSGK_RS28885 (PSGK_28735)	-	6374695..6375321 (-)	627	WP_021221827.1	DUF1780 domain-containing protein	-
PSGK_RS28890 (PSGK_28740)	-	6375435..6375860 (+)	426	WP_265167702.1	GNAT family N-acetyltransferase	-
PSGK_RS28895 (PSGK_28745)	-	6375857..6376324 (+)	468	WP_021221829.1	hypothetical protein	-
PSGK_RS28900 (PSGK_28750)	-	6376321..6377007 (+)	687	WP_374979911.1	energy-coupling factor ABC transporter permease	-
PSGK_RS28905 (PSGK_28755)	-	6377115..6377330 (+)	216	WP_043244210.1	hypothetical protein	-
PSGK_RS28910 (PSGK_28760)	yacG	6377334..6377534 (-)	201	WP_021221832.1	DNA gyrase inhibitor YacG	-
PSGK_RS28915 (PSGK_28765)	coaE	6377531..6378142 (-)	612	WP_271660079.1	dephospho-CoA kinase	-
PSGK_RS28920 (PSGK_28770)	pilD	6378142..6379011 (-)	870	WP_374979912.1	prepilin peptidase	Machinery gene
PSGK_RS28925 (PSGK_28775)	pilC	6379012..6380232 (-)	1221	WP_374979913.1	type II secretion system F family protein	Machinery gene
PSGK_RS28930 (PSGK_28780)	pilB	6380236..6381939 (-)	1704	WP_374979914.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSGK_RS28935 (PSGK_28785)	pilA	6382072..6382497 (-)	426	WP_374979915.1	pilin	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31759.68 Da
• Isoelectric Point: 6.6208

>NTDB_id=942510 PSGK_RS28920 WP_374979912.1 6378142..6379011(-) (pilD) [Pseudomonas solani strain GK13]
MTVIDFLAGNLPAFVFCIFLLGLLVGSFLNVVIYRLPVMMFRDWKAQAREALELPAEPKGETFNLILPNSRCPHCQHEIQ
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLILNNQGMFATPSDALWGAVAGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQALPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=942510 PSGK_RS28920 WP_374979912.1 6378142..6379011(-) (pilD) [Pseudomonas solani strain GK13]
GTGACAGTCATCGACTTCCTGGCCGGCAATTTGCCGGCCTTTGTTTTCTGCATCTTCCTCCTTGGCCTTCTCGTCGGCAG
CTTCCTCAACGTCGTCATCTACCGCTTGCCGGTGATGATGTTCCGTGACTGGAAGGCGCAGGCACGGGAGGCGTTGGAGC
TGCCGGCAGAGCCCAAAGGCGAGACCTTCAACCTGATCCTGCCGAACTCGCGCTGCCCGCATTGCCAGCATGAGATCCAG
GCCTGGGAGAACATCCCGGTGGTCAGTTGGCTGGCCCTGGGTGGCAAGTGCTCGTCGTGCAAGGCGCCGATCAAGAAGCG
CTACCCGCTGGTGGAACTGGCGTGCGGCCTGTTGTCGGCCTATGTCGCCTGGCATTTCGGCTTTACCTGGCAGGCCGGGG
CGTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGACCACCAGTTGCTGCCGGATTCCCTGGTA
CTGCCACTGCTATGGCTCGGCCTGATTCTCAACAACCAGGGCATGTTCGCCACGCCCAGTGATGCGCTCTGGGGCGCAGT
GGCGGGCTATCTCAGCCTGTGGTCGGTGTATTGGGTGTTCAAGCTGGTGACCGGTAAGGAAGGCATGGGCTACGGCGACT
TCAAATTGCTGGCGATGCTCGGTGCCTGGGGCGGCTGGCAGGCGTTGCCGCTGACCATCCTGCTGTCGTCCCTGGTGGGC
GCGGTGCTGGGAATCATCATCCTCAAGCTGCGTGATGCCGACAGCGGCACGCCCATCCCCTTCGGCCCCTACCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTCCACTTCGCCGGTTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.391	92.042	0.519
pilD	Acinetobacter baumannii D1279779	52.465	98.27	0.516
pilD	Acinetobacter nosocomialis M2	51.761	98.27	0.509
pilD	Vibrio campbellii strain DS40M4	53.114	94.464	0.502
pilD	Neisseria gonorrhoeae MS11	52.107	90.311	0.471