Detailed information NTG0942499

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PSGK_RS24035
• Genome accession: NZ_CP146285
• Coordinates: 5341285..5342781 (-)
• Length: 498 a.a.
• NCBI ID: WP_271659595.1
• Uniprot ID: -
• Organism: Pseudomonas solani strain GK13
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5336285..5347781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSGK_RS24015 (PSGK_23880)	-	5337255..5338175 (+)	921	WP_043241005.1	LysR substrate-binding domain-containing protein	-
PSGK_RS24020	-	5338325..5339446 (+)	1122	Protein_4737	Cache 3/Cache 2 fusion domain-containing protein	-
PSGK_RS24025	-	5339579..5340301 (+)	723	WP_371877126.1	methyl-accepting chemotaxis protein	-
PSGK_RS24030 (PSGK_23890)	-	5340377..5341183 (-)	807	WP_271659594.1	TlpA disulfide reductase family protein	-
PSGK_RS24035 (PSGK_23895)	comM	5341285..5342781 (-)	1497	WP_271659595.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PSGK_RS24040 (PSGK_23900)	-	5342816..5343079 (-)	264	WP_021218955.1	accessory factor UbiK family protein	-
PSGK_RS24045 (PSGK_23905)	glnK	5343490..5343828 (+)	339	WP_003457590.1	P-II family nitrogen regulator	-
PSGK_RS24050 (PSGK_23910)	-	5343863..5345182 (+)	1320	WP_271659596.1	ammonium transporter	-
PSGK_RS24055 (PSGK_23915)	-	5345389..5345814 (+)	426	WP_043241100.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
PSGK_RS24060 (PSGK_23920)	sutA	5345891..5346220 (+)	330	WP_043241102.1	transcriptional regulator SutA	-
PSGK_RS24065 (PSGK_23925)	-	5346280..5346984 (-)	705	WP_043241104.1	HAD family hydrolase	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 52790.64 Da
• Isoelectric Point: 7.4899

>NTDB_id=942499 PSGK_RS24035 WP_271659595.1 5341285..5342781(-) (comM) [Pseudomonas solani strain GK13]
MSLALVHSRAQLGVEAPAVTVEAHLTNGLPSLALVGLPEAAVKESKDRVRSAILTSGFEFPLRRITLNLAPADLPKDGGR
FDLAVALGILAASGQVPVASLAEVECLGELALSGALRPVQGVLPAALAARAAGRTLVVPKDNAEEASLASGLRVIAVGHL
LELAAHLTGQTPLEPYASAGLPNRADAYPDLAEVQGQVAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLQE
QEALEVAAIHSVASNTPLDSWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLEN
GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDVTNPCRCTPEQIQRYRAKLSGPLLDRIDLHLTVAREATSLDDPKPG
GQDSASAAKTVAQARQRQLDRQGCANAFLDLQGLRRHCPLVVEDRRWLENACERLGLSLRAAHRIIKVARTLADLDGTPT
IARQHLAEALQYRPATEP

Nucleotide

• Length: 1497 bp

>NTDB_id=942499 PSGK_RS24035 WP_271659595.1 5341285..5342781(-) (comM) [Pseudomonas solani strain GK13]
ATGTCCCTGGCCCTCGTTCACAGCCGCGCTCAGCTAGGCGTCGAAGCGCCTGCCGTAACCGTGGAAGCGCACCTCACCAA
CGGCCTGCCGTCCCTGGCCCTGGTCGGCCTGCCGGAAGCGGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCACCAGCGGCTTCGAATTCCCGCTGCGGCGCATCACCCTGAACCTGGCACCGGCCGACCTGCCCAAGGACGGCGGGCGT
TTCGACCTGGCCGTGGCCCTCGGCATCCTCGCCGCCAGCGGCCAGGTGCCGGTCGCCAGCCTGGCCGAGGTGGAATGCCT
CGGTGAGCTGGCCCTCTCCGGCGCGCTGCGCCCGGTCCAGGGCGTCCTCCCCGCTGCCCTTGCCGCCCGCGCGGCAGGGC
GCACCCTGGTGGTGCCGAAGGACAATGCCGAAGAAGCCAGCCTCGCCAGCGGCCTGCGGGTGATCGCCGTCGGCCACCTG
CTGGAACTGGCCGCGCACCTCACCGGGCAAACGCCCCTCGAACCCTATGCCTCCGCCGGCCTGCCGAACCGCGCCGACGC
CTACCCGGACCTTGCCGAAGTACAGGGCCAGGTGGCCGCCAAGCGCGCCTTGCTGGTGGCCGCCGCCGGTGCCCACAACC
TGCTGCTCTCCGGGCCACCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCCTTGCAGGAG
CAGGAGGCACTGGAAGTCGCCGCCATCCACTCGGTGGCCAGCAACACCCCGCTGGACAGTTGGCCGCAACGCCCCTTCCG
CCAGCCGCACCACAGTGCATCCGGGCCCGCCCTGGTGGGTGGCGGCAGCAAGCCCCGCCCTGGCGAAATCACCCTGGCCC
ACCAGGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACAGAAAGGTCCTCGAAGTCCTGCGCGAGCCCCTGGAGAAC
GGAGAGATCGTCATCGCCCGGGCCAACGACCGGGTGCGCTTCCCGGCGCGCTTCCAACTGGTCGCCGCCATGAACCCCTG
CCCCTGTGGCTACCTGGGTGACGTCACCAACCCGTGCCGTTGCACCCCGGAACAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTCACCGTCGCCCGCGAAGCCACCTCCCTGGACGACCCCAAGCCCGGT
GGCCAGGACAGTGCCAGCGCCGCGAAAACCGTGGCCCAGGCCCGCCAGCGCCAGCTCGATCGCCAGGGCTGCGCCAACGC
GTTTCTCGACCTCCAGGGCCTGCGTCGCCACTGCCCGCTGGTGGTGGAGGACCGTCGCTGGCTGGAAAACGCCTGCGAAC
GCCTCGGCCTGTCGTTGCGCGCCGCACACCGCATCATCAAGGTCGCCCGCACCCTCGCCGATCTCGACGGCACCCCGACC
ATTGCCCGCCAGCACCTGGCCGAGGCACTGCAGTACCGCCCGGCCACCGAGCCCTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.162	99.398	0.558
comM	Vibrio cholerae strain A1552	55.758	99.398	0.554
comM	Haemophilus influenzae Rd KW20	54	100	0.542
comM	Glaesserella parasuis strain SC1401	53.2	100	0.534
comM	Legionella pneumophila str. Paris	49.501	100	0.498
comM	Legionella pneumophila strain ERS1305867	49.501	100	0.498
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.521	100	0.47