Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V8Z81_RS26955 Genome accession   NZ_CP146257
Coordinates   5171122..5171622 (-) Length   166 a.a.
NCBI ID   WP_338788891.1    Uniprot ID   -
Organism   Priestia megaterium strain MLY91     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5166122..5176622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Z81_RS26935 (V8Z81_26935) rplI 5167277..5167726 (-) 450 WP_013059910.1 50S ribosomal protein L9 -
  V8Z81_RS26940 (V8Z81_26940) - 5167723..5169696 (-) 1974 WP_013059911.1 DHH family phosphoesterase -
  V8Z81_RS26945 (V8Z81_26945) - 5169733..5170677 (-) 945 WP_013059912.1 YybS family protein -
  V8Z81_RS26950 (V8Z81_26950) rpsR 5170816..5171055 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  V8Z81_RS26955 (V8Z81_26955) ssbA 5171122..5171622 (-) 501 WP_338788891.1 single-stranded DNA-binding protein Machinery gene
  V8Z81_RS26960 (V8Z81_26960) rpsF 5171671..5171958 (-) 288 WP_013059915.1 30S ribosomal protein S6 -
  V8Z81_RS26965 (V8Z81_26965) ychF 5172148..5173248 (-) 1101 WP_028411917.1 redox-regulated ATPase YchF -
  V8Z81_RS26970 (V8Z81_26970) - 5173419..5173616 (-) 198 WP_013059917.1 DUF951 domain-containing protein -
  V8Z81_RS26975 (V8Z81_26975) - 5173631..5174524 (-) 894 WP_029319512.1 mechanosensitive ion channel family protein -
  V8Z81_RS26980 (V8Z81_26980) - 5174592..5175605 (-) 1014 WP_338788894.1 hypothetical protein -
  V8Z81_RS26985 (V8Z81_26985) yyaC 5175692..5176312 (+) 621 WP_013059920.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18141.77 Da        Isoelectric Point: 4.7980

>NTDB_id=942464 V8Z81_RS26955 WP_338788891.1 5171122..5171622(-) (ssbA) [Priestia megaterium strain MLY91]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGHGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=942464 V8Z81_RS26955 WP_338788891.1 5171122..5171622(-) (ssbA) [Priestia megaterium strain MLY91]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGTGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACATGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCT
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.429

100

0.753
  ssb Latilactobacillus sakei subsp. sakei 23K

56.18

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367
  ssb Vibrio cholerae strain A1552

33.333

100

0.361