Detailed information NTG0941653

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: V6657_RS01270
• Genome accession: NZ_CP146091
• Coordinates: 257526..259007 (-)
• Length: 493 a.a.
• NCBI ID: WP_338754844.1
• Uniprot ID: -
• Organism: Ralstonia sp. RRA.1
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	249859..270681	257526..259007	within	0
IScluster/Tn	255835..256975	257526..259007	flank	551

Gene organization within MGE regions

Location: 249859..270681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6657_RS01225	-	249859..250317 (+)	459	WP_048933331.1	Lrp/AsnC family transcriptional regulator	-
V6657_RS01230	-	250337..251164 (-)	828	WP_048933332.1	SDR family oxidoreductase	-
V6657_RS01235	-	251268..251642 (+)	375	WP_048933333.1	heavy metal-responsive transcriptional regulator	-
V6657_RS01240	-	251940..252593 (+)	654	WP_048933334.1	LysE family transporter	-
V6657_RS01245	-	252641..253282 (+)	642	WP_048933335.1	LysE family transporter	-
V6657_RS01250	-	253286..254713 (-)	1428	WP_048933336.1	MFS transporter	-
V6657_RS01255	-	254876..255373 (+)	498	WP_048933337.1	MarR family transcriptional regulator	-
V6657_RS01260	-	255835..256975 (+)	1141	Protein_251	IS3 family transposase	-
V6657_RS01265	-	257018..257419 (-)	402	WP_048933871.1	hypothetical protein	-
V6657_RS01270	comM	257526..259007 (-)	1482	WP_338754844.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
V6657_RS01275	-	259484..259726 (-)	243	WP_338754845.1	hypothetical protein	-
V6657_RS01280	-	259816..261180 (-)	1365	WP_338754846.1	hypothetical protein	-
V6657_RS01285	-	261146..262378 (-)	1233	WP_338754847.1	zonular occludens toxin domain-containing protein	-
V6657_RS01290	-	262746..264167 (-)	1422	WP_338754848.1	hypothetical protein	-
V6657_RS01295	-	264426..264974 (-)	549	WP_338754849.1	hypothetical protein	-
V6657_RS01300	-	265040..265189 (-)	150	WP_338754850.1	hypothetical protein	-
V6657_RS01305	-	265643..265897 (-)	255	WP_338754851.1	hypothetical protein	-
V6657_RS01310	-	266478..267110 (+)	633	WP_338754852.1	hypothetical protein	-
V6657_RS01315	-	267161..268039 (-)	879	WP_338754853.1	hypothetical protein	-
V6657_RS01320	-	268628..269002 (-)	375	WP_338754854.1	H-NS histone family protein	-
V6657_RS01325	-	269008..270558 (-)	1551	WP_338754855.1	recombinase family protein	-
V6657_RS01330	-	270577..270681 (-)	105	Protein_265	magnesium chelatase subunit ChlI	-

Sequence

Protein

• Length: 493 a.a.
• Molecular weight: 53486.02 Da
• Isoelectric Point: 7.8248

>NTDB_id=941653 V6657_RS01270 WP_338754844.1 257526..259007(-) (comM) [Ralstonia sp. RRA.1]
MHRLWYTVSTNNKTSTIVGLPDTEVKESKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGRFDLAIALGILAASRQIP
HTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRNPASADGEAPLTRAFVLPTENAAEAALVSGTKVLPARTLIEVCDHL
SAPDRKLVPALPAPVDADIRYPDLSDVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQRFPGLLPDMSDDEALSAA
AVMSLTTRGFDAKRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERRVLEVLREPLETGHITIS
RAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVERYQARISGPLLDRIDVQIEVPTPSQEELLDGPPGEPTVN
VAERVSAAHARQLKRQGKRNTLLAGHEIDLHCARTDAADGLLRHAMTRFSWSARAYARVLKLARTIADLAGDEQIDAVHV
GEAIQYRRGVKAD

Nucleotide

• Length: 1482 bp

>NTDB_id=941653 V6657_RS01270 WP_338754844.1 257526..259007(-) (comM) [Ralstonia sp. RRA.1]
TTGCACCGGCTCTGGTACACTGTCAGTACTAACAACAAGACTAGCACCATCGTCGGGTTGCCCGACACCGAGGTGAAGGA
GAGCAAGGACCGTGTGCGCGCGGCCATCCAGAACAGCCGCTTCGAGTTTCCGGCGCGGCGCATCACCGTCAATCTGGCGC
CAGCGGATTTGCCGAAGGAATCCGGGCGATTTGATTTGGCGATTGCGCTGGGCATCCTCGCGGCGAGCCGGCAGATTCCG
CACACACATCTGGATGCGCACGAGTTTGCAGGCGAGTTATCGCTCTCGGGCGATCTGCGGCCGATCCGCGGTGCGCTGGC
GATGGCGTATGCGCTGTCGCGCAACCCCGCATCCGCAGATGGCGAAGCGCCGCTCACACGCGCTTTCGTGCTGCCCACCG
AGAACGCAGCCGAAGCTGCGCTCGTCAGCGGTACCAAGGTGCTGCCTGCGCGTACGCTCATCGAGGTATGCGATCACCTT
AGCGCGCCCGACCGCAAACTTGTGCCCGCGCTACCTGCGCCGGTCGATGCGGACATCCGCTATCCAGATCTGTCGGACGT
GCGCGGCCAGCCGCAGGCGCGGCGTGCGTTGGAAGTGGCGGCTGCGGGCGGCCATTCGATGCTGATGATCGGGCCGCCTG
GCACCGGCAAATCGATGCTGGCGCAACGCTTTCCCGGCCTGCTGCCGGACATGAGCGATGACGAAGCGCTCTCAGCCGCC
GCTGTGATGAGCCTGACCACGCGTGGCTTTGATGCCAAGCGCTGGAAGGTGCGGCCGTTCCGGGCGCCGCATCACACCGC
ATCGGCGGTGGCGATGGTCGGCGGCGGCAATACGCCGAGGCCAGGCGAGATCTCGCTGGCGCACCAAGGCGTTCTATTTT
TGGACGAACTCCCCGAGTTCGAGCGCCGTGTTCTCGAGGTCCTGCGCGAGCCGCTGGAGACCGGCCACATCACCATCTCG
CGCGCCGCGCACCAGACCGACTTCCCCGCCAGCTTCCAGTTGATTGCCGCCATGAACCCGTGCCCCTGCGGCTATCGCGG
CCATCCGCTGCGCGCGTGCCGCTGCACGCCAGACCAGGTGGAGCGCTACCAGGCACGCATCTCCGGTCCGCTGCTCGATC
GCATCGATGTGCAAATCGAAGTGCCGACGCCCTCGCAGGAAGAACTGCTGGACGGACCGCCGGGCGAGCCTACGGTCAAC
GTGGCCGAGCGCGTGTCCGCTGCGCATGCGCGGCAACTCAAGCGCCAGGGCAAGCGCAATACGCTGCTGGCCGGCCACGA
GATCGATCTGCACTGCGCCCGCACGGATGCCGCCGATGGCCTGCTGCGCCACGCGATGACGCGCTTCTCTTGGTCTGCCC
GCGCCTATGCACGCGTGCTCAAGCTCGCCCGCACCATCGCAGATTTGGCAGGCGATGAGCAGATCGATGCGGTACACGTG
GGTGAGGCGATCCAGTATCGGCGTGGGGTGAAGGCGGATTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (396-487)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (183-388)

• Subunit ChlI of Mg-chelatase (ChlI) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	51.559	97.566	0.503
comM	Vibrio campbellii strain DS40M4	51.797	95.943	0.497
comM	Glaesserella parasuis strain SC1401	50.837	96.957	0.493
comM	Haemophilus influenzae Rd KW20	48.861	97.972	0.479
comM	Legionella pneumophila str. Paris	49.269	97.16	0.479
comM	Legionella pneumophila strain ERS1305867	49.269	97.16	0.479
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	43.505	98.377	0.428