Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V6L81_RS04185 Genome accession   NZ_CP146077
Coordinates   908376..909869 (-) Length   497 a.a.
NCBI ID   WP_094999740.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain ML3-2023-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 903376..914869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6L81_RS04170 (V6L81_04170) - 904183..905850 (+) 1668 WP_094999737.1 bifunctional diguanylate cyclase/phosphodiesterase -
  V6L81_RS04175 (V6L81_04175) - 905896..907293 (-) 1398 WP_095026821.1 NorM family multidrug efflux MATE transporter -
  V6L81_RS04180 (V6L81_04180) - 907446..908366 (+) 921 WP_094999739.1 LysR substrate-binding domain-containing protein -
  V6L81_RS04185 (V6L81_04185) comM 908376..909869 (-) 1494 WP_094999740.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V6L81_RS04190 (V6L81_04190) - 910045..910323 (+) 279 Protein_794 type II toxin-antitoxin system RelE/ParE family toxin -
  V6L81_RS04195 (V6L81_04195) - 910331..910636 (+) 306 WP_094999741.1 HigA family addiction module antitoxin -
  V6L81_RS04200 (V6L81_04200) - 910638..911066 (-) 429 WP_095026822.1 VOC family protein -
  V6L81_RS04205 (V6L81_04205) - 911113..911373 (-) 261 WP_094999743.1 accessory factor UbiK family protein -
  V6L81_RS04210 (V6L81_04210) glnK 911790..912128 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  V6L81_RS04215 (V6L81_04215) - 912162..913499 (+) 1338 WP_094999744.1 ammonium transporter -
  V6L81_RS04220 (V6L81_04220) sutA 913982..914308 (+) 327 WP_094999745.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53076.40 Da        Isoelectric Point: 7.9891

>NTDB_id=941594 V6L81_RS04185 WP_094999740.1 908376..909869(-) (comM) [Pseudomonas bubulae strain ML3-2023-1]
MALAIVYSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIINSTLDFPARRITLNLAPADLPKDGGR
FDVAIALGILAASGQLPAVALEQVECLGELALSGAIRPVQGILPAALAARAAGRALVVPQANAEEACLACGLTVIAAEHL
LQLVAHFAGREVIEPYIPSGLLHISKPYPDLSDVQGQLSAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIQSVASQVPLNCWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARAKDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTSLNPPLAS
GDTTANAAGLVAAARERQLQRQGCANAFLDLPGVRTQCRLSDMDNSWLEAACERMTLSLRAAHRLLKVARTLADLEQVHN
IERKHLAEALQYRPFSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=941594 V6L81_RS04185 WP_094999740.1 908376..909869(-) (comM) [Pseudomonas bubulae strain ML3-2023-1]
ATGGCTCTGGCGATTGTTTACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCTGCCGTTACGGTCGAGGCGCATCTGGCCAA
TGGGTTGCCTGCGTTGACGCTGGTTGGTTTGCCCGAAACAGCGGTCAAGGAAAGTAAAGACCGGGTACGCAGCGCAATCA
TCAACTCCACGCTGGATTTCCCGGCCCGGCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATGTGGCCATTGCCCTGGGCATTTTGGCGGCCAGCGGGCAACTGCCGGCCGTGGCGCTGGAGCAGGTGGAGTGTTT
GGGCGAACTGGCGCTATCGGGCGCAATCAGGCCAGTGCAGGGCATATTGCCTGCCGCCCTGGCAGCAAGGGCCGCAGGCC
GGGCGCTGGTGGTACCGCAGGCCAATGCCGAAGAAGCCTGCCTGGCCTGCGGGCTGACAGTAATTGCGGCCGAGCACTTG
TTGCAGTTGGTGGCCCATTTCGCAGGTCGGGAGGTGATAGAGCCCTATATCCCCAGCGGCTTGCTGCATATCAGCAAACC
CTACCCCGACCTGAGCGATGTCCAAGGGCAGCTTTCGGCCAAACGGGCATTGCTGGTCGCTGCTGCTGGCAGTCACAACC
TGCTGTTTACCGGGCCGCCGGGCACGGGTAAAACCTTGCTGGCCAGCCGCCTGCCCGGCTTGTTGCCACCGCTCAATGAG
CAAGAGGCGCTGGAAGTGGCCGCCATTCAGTCAGTGGCCAGCCAGGTGCCATTGAACTGCTGGCCACAGCGACCGTTTCG
CCAACCTCATCATTCGGCCTCGGGGCCGGCGCTGGTGGGCGGCGGCTCCAAACCGCGGCCCGGGGAAATAACCCTGGCCC
ATCACGGCGTATTGTTTCTGGATGAGCTTCCCGAGTTTGATCGCAAGGTTCTGGAAGTCTTGCGGGAGCCCATGGAAAGC
GGCTTTATCGTGATTGCACGGGCGAAAGATCGCATGCGTTTTCCGGCGCGCTTCCAACTGGTTGCGGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAACCCACTGGCCGCTGCCGCTGTACACCGGAGCAAATCCAGCGCTATCGCAACAAACTTT
CCGGCCCATTGCTCGATCGCATCGACCTGCACCTGACCGTAGCCCGCGAGACCACCTCTCTCAACCCGCCGCTTGCCTCA
GGTGACACCACGGCCAACGCCGCCGGGCTTGTGGCTGCGGCGCGTGAGCGCCAACTGCAACGTCAGGGCTGCGCCAATGC
CTTTCTCGATCTGCCGGGAGTGCGAACCCAATGCCGCTTGAGCGATATGGATAACAGCTGGCTGGAGGCGGCTTGCGAGC
GCATGACCTTGTCACTGCGAGCGGCACACCGACTGCTGAAAGTGGCAAGGACCCTGGCGGATCTGGAGCAGGTACACAAT
ATAGAGCGCAAGCATCTCGCAGAGGCGTTGCAATATCGGCCATTCAGTGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Vibrio campbellii strain DS40M4

54.949

99.598

0.547
  comM Haemophilus influenzae Rd KW20

54.2

100

0.545
  comM Glaesserella parasuis strain SC1401

53.493

100

0.539
  comM Legionella pneumophila str. Paris

48.387

99.799

0.483
  comM Legionella pneumophila strain ERS1305867

48.387

99.799

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

100

0.449