Detailed information NTG0941571

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: V6B39_RS04950
• Genome accession: NZ_CP146072
• Coordinates: 1126465..1127958 (-)
• Length: 497 a.a.
• NCBI ID: WP_094999740.1
• Uniprot ID: -
• Organism: Pseudomonas bubulae strain S2-2023-2
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1121465..1132958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6B39_RS04935 (V6B39_04935)	-	1122272..1123939 (+)	1668	WP_094999737.1	bifunctional diguanylate cyclase/phosphodiesterase	-
V6B39_RS04940 (V6B39_04940)	-	1123985..1125382 (-)	1398	WP_095026821.1	NorM family multidrug efflux MATE transporter	-
V6B39_RS04945 (V6B39_04945)	-	1125535..1126455 (+)	921	WP_094999739.1	LysR substrate-binding domain-containing protein	-
V6B39_RS04950 (V6B39_04950)	comM	1126465..1127958 (-)	1494	WP_094999740.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
V6B39_RS04955 (V6B39_04955)	-	1128134..1128412 (+)	279	Protein_961	type II toxin-antitoxin system RelE/ParE family toxin	-
V6B39_RS04960 (V6B39_04960)	-	1128420..1128725 (+)	306	WP_094999741.1	HigA family addiction module antitoxin	-
V6B39_RS04965 (V6B39_04965)	-	1128727..1129155 (-)	429	WP_095026822.1	VOC family protein	-
V6B39_RS04970 (V6B39_04970)	-	1129202..1129462 (-)	261	WP_094999743.1	accessory factor UbiK family protein	-
V6B39_RS04975 (V6B39_04975)	glnK	1129879..1130217 (+)	339	WP_002555808.1	P-II family nitrogen regulator	-
V6B39_RS04980 (V6B39_04980)	-	1130251..1131588 (+)	1338	WP_094999744.1	ammonium transporter	-
V6B39_RS04985 (V6B39_04985)	sutA	1132071..1132397 (+)	327	WP_094999745.1	transcriptional regulator SutA	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 53076.40 Da
• Isoelectric Point: 7.9891

>NTDB_id=941571 V6B39_RS04950 WP_094999740.1 1126465..1127958(-) (comM) [Pseudomonas bubulae strain S2-2023-2]
MALAIVYSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIINSTLDFPARRITLNLAPADLPKDGGR
FDVAIALGILAASGQLPAVALEQVECLGELALSGAIRPVQGILPAALAARAAGRALVVPQANAEEACLACGLTVIAAEHL
LQLVAHFAGREVIEPYIPSGLLHISKPYPDLSDVQGQLSAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIQSVASQVPLNCWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARAKDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTSLNPPLAS
GDTTANAAGLVAAARERQLQRQGCANAFLDLPGVRTQCRLSDMDNSWLEAACERMTLSLRAAHRLLKVARTLADLEQVHN
IERKHLAEALQYRPFSG

Nucleotide

• Length: 1494 bp

>NTDB_id=941571 V6B39_RS04950 WP_094999740.1 1126465..1127958(-) (comM) [Pseudomonas bubulae strain S2-2023-2]
ATGGCTCTGGCGATTGTTTACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCTGCCGTTACGGTCGAGGCGCATCTGGCCAA
TGGGTTGCCTGCGTTGACGCTGGTTGGTTTGCCCGAAACAGCGGTCAAGGAAAGTAAAGACCGGGTACGCAGCGCAATCA
TCAACTCCACGCTGGATTTCCCGGCCCGGCGTATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATGTGGCCATTGCCCTGGGCATTTTGGCGGCCAGCGGGCAACTGCCGGCCGTGGCGCTGGAGCAGGTGGAGTGTTT
GGGCGAACTGGCGCTATCGGGCGCAATCAGGCCAGTGCAGGGCATATTGCCTGCCGCCCTGGCAGCAAGGGCCGCAGGCC
GGGCGCTGGTGGTACCGCAGGCCAATGCCGAAGAAGCCTGCCTGGCCTGCGGGCTGACAGTAATTGCGGCCGAGCACTTG
TTGCAGTTGGTGGCCCATTTCGCAGGTCGGGAGGTGATAGAGCCCTATATCCCCAGCGGCTTGCTGCATATCAGCAAACC
CTACCCCGACCTGAGCGATGTCCAAGGGCAGCTTTCGGCCAAACGGGCATTGCTGGTCGCTGCTGCTGGCAGTCACAACC
TGCTGTTTACCGGGCCGCCGGGCACGGGTAAAACCTTGCTGGCCAGCCGCCTGCCCGGCTTGTTGCCACCGCTCAATGAG
CAAGAGGCGCTGGAAGTGGCCGCCATTCAGTCAGTGGCCAGCCAGGTGCCATTGAACTGCTGGCCACAGCGACCGTTTCG
CCAACCTCATCATTCGGCCTCGGGGCCGGCGCTGGTGGGCGGCGGCTCCAAACCGCGGCCCGGGGAAATAACCCTGGCCC
ATCACGGCGTATTGTTTCTGGATGAGCTTCCCGAGTTTGATCGCAAGGTTCTGGAAGTCTTGCGGGAGCCCATGGAAAGC
GGCTTTATCGTGATTGCACGGGCGAAAGATCGCATGCGTTTTCCGGCGCGCTTCCAACTGGTTGCGGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAACCCACTGGCCGCTGCCGCTGTACACCGGAGCAAATCCAGCGCTATCGCAACAAACTTT
CCGGCCCATTGCTCGATCGCATCGACCTGCACCTGACCGTAGCCCGCGAGACCACCTCTCTCAACCCGCCGCTTGCCTCA
GGTGACACCACGGCCAACGCCGCCGGGCTTGTGGCTGCGGCGCGTGAGCGCCAACTGCAACGTCAGGGCTGCGCCAATGC
CTTTCTCGATCTGCCGGGAGTGCGAACCCAATGCCGCTTGAGCGATATGGATAACAGCTGGCTGGAGGCGGCTTGCGAGC
GCATGACCTTGTCACTGCGAGCGGCACACCGACTGCTGAAAGTGGCAAGGACCCTGGCGGATCTGGAGCAGGTACACAAT
ATAGAGCGCAAGCATCTCGCAGAGGCGTTGCAATATCGGCCATTCAGTGGCTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	55.152	99.598	0.549
comM	Vibrio campbellii strain DS40M4	54.949	99.598	0.547
comM	Haemophilus influenzae Rd KW20	54.2	100	0.545
comM	Glaesserella parasuis strain SC1401	53.493	100	0.539
comM	Legionella pneumophila str. Paris	48.387	99.799	0.483
comM	Legionella pneumophila strain ERS1305867	48.387	99.799	0.483
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	44.334	100	0.449