Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V6985_RS20780 Genome accession   NZ_CP146071
Coordinates   4491398..4492912 (+) Length   504 a.a.
NCBI ID   WP_256686549.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain GMT3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4486398..4497912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6985_RS20765 (V6985_20775) - 4488126..4489067 (-) 942 WP_059111903.1 branched-chain amino acid transaminase -
  V6985_RS20770 (V6985_20780) ilvM 4489080..4489370 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  V6985_RS20775 (V6985_20785) ilvG 4489367..4491013 (-) 1647 WP_256686551.1 acetolactate synthase 2 catalytic subunit -
  V6985_RS20780 (V6985_20790) comM 4491398..4492912 (+) 1515 WP_256686549.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V6985_RS20785 (V6985_20795) - 4493049..4493948 (+) 900 WP_409011488.1 acyltransferase -
  V6985_RS20790 (V6985_20800) - 4494107..4494604 (-) 498 WP_409011489.1 DUF523 domain-containing protein -
  V6985_RS20795 (V6985_20805) - 4494601..4495251 (-) 651 WP_011898224.1 NrtR DNA-binding winged helix domain-containing protein -
  V6985_RS20800 (V6985_20810) - 4495326..4495961 (+) 636 WP_125608408.1 nicotinamidase -
  V6985_RS20805 (V6985_20815) pncB 4496063..4497241 (+) 1179 WP_021138499.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54692.63 Da        Isoelectric Point: 7.6884

>NTDB_id=941562 V6985_RS20780 WP_256686549.1 4491398..4492912(+) (comM) [Aeromonas salmonicida strain GMT3]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKVERG
ESSQQIRDRVLAARERMLSRNGKLNNLLNSREIEDVCRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=941562 V6985_RS20780 WP_256686549.1 4491398..4492912(+) (comM) [Aeromonas salmonicida strain GMT3]
ATGTCATTAGCTGTGGTTTATAGCCGTGCTAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCAGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACAGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCCCTCATTCAGGATGCGGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAATCTGC
TGTTCATAGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCATCACAGTGCCTCCGCCGTGGCTCTGGTGGGTGGTGGCAGCCATCCCAGACCCGGCGAAATATCCTTGGCCC
ACAATGGTGTGCTCTTTCTCGACGAGCTGCCGGAGTTCGAGCGCAAGGTACTCGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGTCAGACCCGCTCCAGCCCGGATCAGATACTTCGCTATCTTGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGTGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGAATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGAATAGTCGTGAAATCGAAGATGTTTGCCGATTATCACCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGACTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGATCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGATTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

51.19

100

0.512
  comM Legionella pneumophila strain ERS1305867

51.19

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466