Detailed information NTG0940421

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: V6U64_RS00820
• Genome accession: NZ_CP145862
• Coordinates: 156550..156987 (+)
• Length: 145 a.a.
• NCBI ID: WP_227071977.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS4
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 151550..161987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U64_RS00790 (V6U64_00790)	-	153225..153587 (+)	363	WP_014635121.1	DUF1033 family protein	-
V6U64_RS00795 (V6U64_00795)	comGA/cglA/cilD	153667..154608 (+)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
V6U64_RS00800 (V6U64_00800)	comYB	154490..155590 (+)	1101	WP_148263031.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6U64_RS00805 (V6U64_00805)	comYC	155599..155913 (+)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
V6U64_RS00810 (V6U64_00810)	comYD	155873..156301 (+)	429	WP_270334813.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6U64_RS00815 (V6U64_00815)	comGE	156333..156563 (+)	231	WP_021144685.1	competence type IV pilus minor pilin ComGE	-
V6U64_RS00820 (V6U64_00820)	comYF	156550..156987 (+)	438	WP_227071977.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6U64_RS00825 (V6U64_00825)	comGG	156965..157282 (+)	318	WP_227071976.1	competence type IV pilus minor pilin ComGG	-
V6U64_RS00830 (V6U64_00830)	comYH	157327..158283 (+)	957	WP_227071975.1	class I SAM-dependent methyltransferase	Machinery gene
V6U64_RS00835 (V6U64_00835)	-	158340..159533 (+)	1194	WP_002885831.1	acetate kinase	-
V6U64_RS00840 (V6U64_00840)	-	159786..159983 (+)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V6U64_RS00845 (V6U64_00845)	-	159995..160591 (+)	597	WP_410536720.1	CPBP family intramembrane glutamic endopeptidase	-
V6U64_RS00850 (V6U64_00850)	-	160731..161177 (+)	447	WP_073686090.1	CAAX protease	-
V6U64_RS00855 (V6U64_00855)	-	161290..161952 (+)	663	WP_002885821.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16169.60 Da
• Isoelectric Point: 8.4658

>NTDB_id=940421 V6U64_RS00820 WP_227071977.1 156550..156987(+) (comYF) [Streptococcus salivarius strain KSS4]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVKQQESQEWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKASTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=940421 V6U64_RS00820 WP_227071977.1 156550..156987(+) (comYF) [Streptococcus salivarius strain KSS4]
ATGTCTCTCAATAGCAAGGTTCGTGCTTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTGATTGCTGGTTCAGTTCA
AGTTTATCAAGGTCTGACCACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAGCCAAGAATGGCTTCTAT
TTGTCCAACAAATGGAGGCAGAATTAGAAGGTTGTCAGTTGGTAAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTAGCTTTTGGACTATCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAAGCTAGTACAATTAGTCAAAATAACCAGATAGTCACCATCCAAGTGACTCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae Rx1	50.704	97.931	0.497
comGF/cglF	Streptococcus pneumoniae D39	50.704	97.931	0.497
comGF/cglF	Streptococcus pneumoniae R6	50.704	97.931	0.497
comGF/cglF	Streptococcus pneumoniae TIGR4	50.704	97.931	0.497
comGF/cglF	Streptococcus mitis SK321	47.917	99.31	0.476
comGF/cglF	Streptococcus mitis NCTC 12261	47.917	99.31	0.476
comGF	Lactococcus lactis subsp. cremoris KW2	44.604	95.862	0.428