Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   V6U64_RS00830 Genome accession   NZ_CP145862
Coordinates   157327..158283 (+) Length   318 a.a.
NCBI ID   WP_227071975.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152327..163283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS00790 (V6U64_00790) - 153225..153587 (+) 363 WP_014635121.1 DUF1033 family protein -
  V6U64_RS00795 (V6U64_00795) comGA/cglA/cilD 153667..154608 (+) 942 WP_002887018.1 competence type IV pilus ATPase ComGA Machinery gene
  V6U64_RS00800 (V6U64_00800) comYB 154490..155590 (+) 1101 WP_148263031.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6U64_RS00805 (V6U64_00805) comYC 155599..155913 (+) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  V6U64_RS00810 (V6U64_00810) comYD 155873..156301 (+) 429 WP_270334813.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6U64_RS00815 (V6U64_00815) comGE 156333..156563 (+) 231 WP_021144685.1 competence type IV pilus minor pilin ComGE -
  V6U64_RS00820 (V6U64_00820) comYF 156550..156987 (+) 438 WP_227071977.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6U64_RS00825 (V6U64_00825) comGG 156965..157282 (+) 318 WP_227071976.1 competence type IV pilus minor pilin ComGG -
  V6U64_RS00830 (V6U64_00830) comYH 157327..158283 (+) 957 WP_227071975.1 class I SAM-dependent methyltransferase Machinery gene
  V6U64_RS00835 (V6U64_00835) - 158340..159533 (+) 1194 WP_002885831.1 acetate kinase -
  V6U64_RS00840 (V6U64_00840) - 159786..159983 (+) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  V6U64_RS00845 (V6U64_00845) - 159995..160591 (+) 597 WP_410536720.1 CPBP family intramembrane glutamic endopeptidase -
  V6U64_RS00850 (V6U64_00850) - 160731..161177 (+) 447 WP_073686090.1 CAAX protease -
  V6U64_RS00855 (V6U64_00855) - 161290..161952 (+) 663 WP_002885821.1 CPBP family intramembrane glutamic endopeptidase -
  V6U64_RS00860 (V6U64_00860) proC 161979..162749 (-) 771 WP_073686089.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35772.70 Da        Isoelectric Point: 4.4586

>NTDB_id=940422 V6U64_RS00830 WP_227071975.1 157327..158283(+) (comYH) [Streptococcus salivarius strain KSS4]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKNLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPKVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=940422 V6U64_RS00830 WP_227071975.1 157327..158283(+) (comYH) [Streptococcus salivarius strain KSS4]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAGTTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
ACCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTATATCCAAGAAGATGCTGTTCGACCACATATTCTCAAAGAGAGTGATGTTATTATTAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAAATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCTCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGTCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCAGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGTG
ATTTGCAAAACCCAAAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.159

99.057

0.695
  comYH Streptococcus mutans UA140

70.159

99.057

0.695