Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U63_RS07130 Genome accession   NZ_CP145861
Coordinates   1588360..1590330 (-) Length   656 a.a.
NCBI ID   WP_155123796.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583360..1595330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS07110 (V6U63_07105) amiF 1583865..1584794 (-) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  V6U63_RS07115 (V6U63_07110) amiE 1584787..1585872 (-) 1086 WP_349955229.1 ABC transporter ATP-binding protein Regulator
  V6U63_RS07120 (V6U63_07115) amiD 1585882..1586808 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U63_RS07125 (V6U63_07120) - 1586808..1588299 (-) 1492 Protein_1362 ABC transporter permease -
  V6U63_RS07130 (V6U63_07125) amiA 1588360..1590330 (-) 1971 WP_155123796.1 peptide ABC transporter substrate-binding protein Regulator
  V6U63_RS07135 (V6U63_07130) amiA 1590512..1592482 (-) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator
  V6U63_RS07140 (V6U63_07135) pta 1592718..1593701 (-) 984 WP_037603038.1 phosphate acetyltransferase -
  V6U63_RS07145 (V6U63_07140) - 1593717..1594613 (-) 897 WP_022496734.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72921.33 Da        Isoelectric Point: 5.2858

>NTDB_id=940389 V6U63_RS07130 WP_155123796.1 1588360..1590330(-) (amiA) [Streptococcus salivarius strain KSS3]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGINL
KDSQDGIFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKPTVARAQSLKQSVEKTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVENAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940389 V6U63_RS07130 WP_155123796.1 1588360..1590330(-) (amiA) [Streptococcus salivarius strain KSS3]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAAACATTGGACTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAATGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGATTGGACTGTTTCGGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCGGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAATTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTACGATGCTTCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCTGCACAACTTAATGGTGAAAAAGGTGCAGCCCTTGCTGTTCGTAACCTTCTCGTGAAACCTGATTTTGTTT
ATGCTGGTGATAAGTCATTCGGTGATTTGGTAACTGAAAAGATGGCTTCATATGGCGATGAATGGTCAGGTATTAACCTT
AAAGACAGTCAAGATGGTATCTTCAACGCTGATAAGGCTAAGACTGAATTTAACAAGGCTAAGGAAGCCCTCCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCTGCAAAACCAACTGTAGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTGGTTGTAGACGTTCATCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCAGCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCACCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGAAAATGCAGCTAAGGAAACAAGCGACCTCAAT
GTGCGTTATGAACGTTATGCAGAAGCACAAGCATGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTAAATAAGGG
TGCTGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCCTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTCGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

74.848

100

0.748
  amiA3 Streptococcus thermophilus LMG 18311

74.734

100

0.748
  amiA3 Streptococcus thermophilus LMD-9

74.734

100

0.748